Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two-component response regulator PilR from Pseudomonas syringae pv. syringae B728a

 Score =  271 bits (694), Expect = 3e-77
 Identities = 159/462 (34%), Positives = 262/462 (56%), Gaps = 24/462 (5%)

Query: 14  QAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRS 73
           Q   +L+VDDE  ++ +L+  L +       A ++ EA        +D+ + D+ LP  +
Sbjct: 3   QRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGN 62

Query: 74  GIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNK 133
           G+E  +          V  +T   +L+TAI ALK GA DF+ KP +L ++ + V   ++ 
Sbjct: 63  GLELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSL 122

Query: 134 RLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
              +           R    +++G S+    L+ +I + A S+A + I GESG+GKELVA
Sbjct: 123 PGAQPT---------RSIDNRLLGDSLAMRTLRSQIGKLARSQAPIYISGESGSGKELVA 173

Query: 194 RGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R IHE   R   PF+P+NCGAI  EL+ESE FGH  G+F+GA + + GLF+ A+ GTLFL
Sbjct: 174 RLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFL 233

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DE+ ++PL MQ  LLR ++++++R VG ++E  VDVR++ AT++NL  EV  GRFR DLY
Sbjct: 234 DEVADLPLAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLY 293

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           YRLNV+++ V  LRER++D+ +L     K L      P+ +   + + +++ Y +PGN+R
Sbjct: 294 YRLNVIEVRVPSLRERREDIDQLAASVLKRLAGNGAQPVARLNAQALETLKSYRFPGNVR 353

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+N++ER   L +       E++   +      +  +++   ++  DN+         D
Sbjct: 354 ELENMLERAYTLCEND-----EIHASDLRLTESASPQENDGPSLADIDNL--------ED 400

Query: 433 WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
           + L +VE+  I Q +     N++AAA  L ++ ++L  + K+
Sbjct: 401 Y-LESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKK 441