Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  277 bits (709), Expect = 5e-79
 Identities = 177/462 (38%), Positives = 252/462 (54%), Gaps = 28/462 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           VL+VDDE  +  VL +         +  +    A  L       ++I D+N+PG  GI  
Sbjct: 11  VLIVDDEPHIGTVLMQLFELNGLNAEATTDPHLAISLIDRDWPGVVITDVNMPGMDGISL 70

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                  D    V+ +TGF D+  A+SALK GA DF+ KPFN E ML  V+R + KR   
Sbjct: 71  LAQCIRIDADLPVVLLTGFGDIAMAVSALKQGAYDFLEKPFNNEHMLDVVKRALEKRSLT 130

Query: 138 RLQYALQRDFQRHCTT--QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
                L++  + H     +I+G+S     L+  I     + A VLIEGE+GTGKELVAR 
Sbjct: 131 LENRKLKKQLESHAIPGPRILGNSPGIVRLRNLIDMVVNTPADVLIEGETGTGKELVARC 190

Query: 196 IHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
           +H+ S R Q  FV INCGAI   L+ESELFG  +GAFTG  K+R G F  ANGGTLFLDE
Sbjct: 191 LHDHSPRHQANFVAINCGAIPENLIESELFGAEAGAFTGIDKARVGKFEFANGGTLFLDE 250

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           I   PL++Q  LLRVLE R V  +GS K + +D+RVVAAT  +L+Q  + G FR DL YR
Sbjct: 251 IESTPLSLQVKLLRVLEDRKVERLGSNKSIPLDIRVVAATKVDLKQLCDKGEFRQDLLYR 310

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           LN++ I + PL+ER++D+  L   F ++  A     +   + E  + M  +DWPGN+REL
Sbjct: 311 LNLVTIPIPPLKERREDIPLLFLHFARIASARYHKELIFPSAEHHARMTAHDWPGNVREL 370

Query: 375 KNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWP 434
           +NL ER +LLG                AE     S   ++++  G +++Q          
Sbjct: 371 RNLAERYVLLG----------------AESAFAASLGGHAQLQSGMSLSQ---------R 405

Query: 435 LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
           +   E+  I++ ++ + G+       L + RKTL  K ++++
Sbjct: 406 VEFFERMLIEEALSHNRGSIKQTMEQLELPRKTLYDKMRKYD 447