Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  549 bits (1415), Expect = e-161
 Identities = 280/469 (59%), Positives = 350/469 (74%), Gaps = 23/469 (4%)

Query: 15  AFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSG 74
           A SVL+VDDE GM+  L KALSK F+ V+ A S+EEAE LR   H+DL+I+DI LPGRSG
Sbjct: 14  AVSVLIVDDEPGMRSFLNKALSKKFALVETAGSVEEAEQLRSRCHFDLIIVDIRLPGRSG 73

Query: 75  IEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR 134
           IEW EA +D D R+D+IFMTG+AD+E AI AL+ GASDFI+KPF+LEQML+AV R + +R
Sbjct: 74  IEWHEALSDEDRRSDIIFMTGYADMEVAIQALRAGASDFIMKPFHLEQMLKAVDRAIERR 133

Query: 135 LNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
           L +R    L+R+     ++ IIG+S   + +K  I + AP+ A VLIEGESGTGKELVAR
Sbjct: 134 LLKRENLMLRREVSIGYSSSIIGNSAAMQEVKNIIARVAPTNAVVLIEGESGTGKELVAR 193

Query: 195 GIHEASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
            +H+ SGRQGPFVP+NCGAIAPELLESELFGH +G+FTGAK +REGLF  A+GGT+FLDE
Sbjct: 194 QLHQLSGRQGPFVPVNCGAIAPELLESELFGHAAGSFTGAKGAREGLFSFASGGTIFLDE 253

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           IGEMPL MQ +LLRVLEQ+A+RPVGSEKEV++DVRVVAATNR L  EVE G FR DL+YR
Sbjct: 254 IGEMPLKMQTALLRVLEQKAIRPVGSEKEVSIDVRVVAATNRKLADEVEAGHFRRDLFYR 313

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           LNVL+I++ PLR+R +D+ EL   FT++L AELG+    W++ED+S +Q +DWPGNIREL
Sbjct: 314 LNVLEIQIPPLRDRPEDVVELTHHFTRVLGAELGVRELVWSHEDLSRLQQHDWPGNIREL 373

Query: 375 KNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWP 434
           +N+IER +LLGKPPA YW+                 +   E+  G        G+P +WP
Sbjct: 374 RNMIERSILLGKPPAEYWK-----------------TTIKEVEPG------QFGFPLEWP 410

Query: 435 LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESEDLSHE 483
           L  VEK H+  +V  H GNKSAAARDLGV+RKTL+RK+KEW   D   E
Sbjct: 411 LKDVEKHHVLAVVEAHGGNKSAAARDLGVSRKTLDRKFKEWFGTDSDEE 459