Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  276 bits (705), Expect = 1e-78
 Identities = 177/467 (37%), Positives = 265/467 (56%), Gaps = 14/467 (2%)

Query: 12  LYQAFSVLLVDDEVGMQLVLKKALSKWFSRVDLA-SSIEEAEVLRGEHHYDLLILDINLP 70
           L  A +VL+VDD+  ++ +L   LSK   RV  A   +E  EV R +   D+++LDI +P
Sbjct: 2   LAPAQTVLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRT-DVVLLDIRMP 60

Query: 71  GRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRC 130
             +G+E  +A  + D    VI MT FA++ TA+ A+K GA D+++KPF+LE++   V+R 
Sbjct: 61  RMNGLEAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRA 120

Query: 131 MNKRLNERLQYALQRDF-QRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGK 189
           +  R       +L+R+  +R+    I+  + +   L+Q I + A S+A+VLI+GESGTGK
Sbjct: 121 LEIRSMRADIVSLRRELSERYGAEGILTDNPKMMDLRQTIAKVARSQATVLIQGESGTGK 180

Query: 190 ELVARGIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGG 248
           ELVA  +H  S R  GPF+ +NC AI   LLESE FGH  GAFTGA   R G F  A  G
Sbjct: 181 ELVAASVHYGSPRATGPFIRVNCAAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHG 240

Query: 249 TLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFR 308
           TLFLDEIGE+   +Q  LLRVL++R    VG  + +  DVR+VAATNR+L+  +  G FR
Sbjct: 241 TLFLDEIGEISPALQVKLLRVLQEREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFR 300

Query: 309 GDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWP 368
            DL++RLNV+ ++  PLR+R +D+  L   F     A+  + +  +    +  M  Y WP
Sbjct: 301 QDLFFRLNVVALKTIPLRDRPEDIRLLADHFLGRFAADNNVVIRGFDPAALDCMLAYPWP 360

Query: 369 GNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLG 428
           GN+REL N +ER +++         +L    I  E    +S+     +  G+ +      
Sbjct: 361 GNVRELVNAVERAVVMSTGNVILRDDLPENIICGERAAFVSEL----LPDGEAIR----- 411

Query: 429 YPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
            P     S  E   I+  +A + GN++  A  LG++R+ L  K +E+
Sbjct: 412 -PLREMASEFETRVIRLALARNGGNRARTAIQLGISRRALLYKLQEY 457