Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., sigma-54 dependent transcriptional regulator from Parabacteroides merdae CL09T00C40

 Score =  279 bits (714), Expect = 1e-79
 Identities = 169/468 (36%), Positives = 261/468 (55%), Gaps = 33/468 (7%)

Query: 14  QAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLP--- 70
           QA ++L+VDD   +   L+  L   F  V+ AS+      +      DL++LD+N     
Sbjct: 2   QAGTILIVDDNKSVLTSLELLLEDEFEGVETASNPNSILSVLDSRPVDLVLLDMNFSAGV 61

Query: 71  --GRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQ 128
             G  G+ W     +      VI +T + D+E A+ ALK GA+DF+LKP++ + ++  ++
Sbjct: 62  NTGNEGLFWLRRIREIAPELPVIMLTAYGDVELAVRALKGGAADFVLKPWDNDNLIGKIR 121

Query: 129 RCMNKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTG 188
             +++R + +L + ++R  +      IIG S     L + + + A + A+VLI GE+GTG
Sbjct: 122 AALHERKSSQLVHPVERPSE---PAMIIGHSPVMMKLIKVVTKVAKTDANVLITGENGTG 178

Query: 189 KELVARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANG 247
           KE++AR IH  S R G   V ++ GA++  L ESELFGH  GAFT A++SR G F  A+G
Sbjct: 179 KEMLAREIHRLSLRSGREMVNVDMGAVSESLFESELFGHERGAFTDARESRPGKFEAAHG 238

Query: 248 GTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRF 307
            TLFLDEIG +PL +QA LL  L+ R V  +GS +++ VD+R++AATNRNL + V    F
Sbjct: 239 STLFLDEIGNLPLGLQAKLLAALQNREVTRLGSNRKIPVDIRLIAATNRNLPEMVAQSLF 298

Query: 308 RGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDW 367
           R DL+YR+N ++IE+ PLR R++D+   + +F K      G P      + +  + +YDW
Sbjct: 299 REDLFYRINTIQIEIPPLRNRREDIALFVDYFLKKYTDLYGRPGLILHPQALEKLANYDW 358

Query: 368 PGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSL 427
           PGNIREL++ IE+ ++L +        +    ++  P   +S S                
Sbjct: 359 PGNIRELQHTIEKAVILAEK-----NVIRASDLFIRPGKALSFSE--------------- 398

Query: 428 GYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
             PN   L  VE+  I   +  +EGN +AAA  LGV+R+TL  K K +
Sbjct: 399 -VPN---LEEVERQAILAAITQNEGNLTAAAEQLGVSRQTLYNKMKRF 442