Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., transcriptional regulatory protein, containing sigma-54 interaction domain from Phaeobacter inhibens DSM 17395

 Score =  320 bits (819), Expect = 8e-92
 Identities = 179/463 (38%), Positives = 270/463 (58%), Gaps = 37/463 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           S+L++DDE GM+  + K L+    RV+ A+S  EA  +  + H+DL+ILD  +PG++G+E
Sbjct: 22  SILVIDDEPGMRNFMTKILTPRCKRVEQAASAAEASNILDQAHFDLIILDNIMPGKTGLE 81

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
           W +        AD + +T +ADLETAI AL++G +DF+LKPF   Q+L +V R ++++  
Sbjct: 82  WVQEQHKVGLFADTVLVTAYADLETAIQALRVGVADFVLKPFRANQILNSVARALDRKHL 141

Query: 137 ERLQYALQRDFQRHCTT---QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
            R  Y L+       T    +++G S   +  +  I + AP    VL  G SGTGKE+ A
Sbjct: 142 RRENYLLKHALSAEGTAARGRLLGKSPAIQTARDMITRLAPLPTPVLFTGASGTGKEIAA 201

Query: 194 RGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R +H  S R + PFV +NC AIAP+ +  ELFG          + ++GLF  A+GGTLFL
Sbjct: 202 RTLHSLSDRAEKPFVAVNCAAIAPDRIAHELFG----VVDAQDRRQDGLFLYADGGTLFL 257

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DE+ +MP  +QA+LLRVLE + +RPVG+E+++ +++R + ATN +L+Q V  GRFR DLY
Sbjct: 258 DEVAQMPEQVQAALLRVLEDQRIRPVGAERDIPLNLRFLFATNADLEQAVSEGRFRADLY 317

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           +R+NV+ I++ PLRER +D+ EL   F +     L MP  +   + +     Y WPGN+R
Sbjct: 318 HRINVVNIQMPPLRERVEDIVELAALFMEQFSITLAMPALELDADTLLKFSRYHWPGNVR 377

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+NLIER ++LG  P  +              VT S + ++                  
Sbjct: 378 ELRNLIERSVILGAFPEEF---------AGTGAVTGSAAMDT------------------ 410

Query: 433 WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
             L  V + HI  ++   +GN++ AAR LGV+RKT++RK   W
Sbjct: 411 --LDLVMQRHIMHVLDACQGNRAEAARRLGVSRKTVDRKCASW 451