Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., sigma-54-dependent Fis family transcriptional regulator from Pedobacter sp. GW460-11-11-14-LB5

 Score =  271 bits (694), Expect = 3e-77
 Identities = 166/463 (35%), Positives = 260/463 (56%), Gaps = 25/463 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+++D+     +L+  L+K    + L + ++++      + +DLL++D  LP  +G+E 
Sbjct: 4   ILILEDDTTFAQLLEGFLTKNGHEITLVTQVKQSFKQVENNEFDLLLIDYRLPDGTGLEV 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR-LN 136
                D       I MT F D+ TA+ +++LGA D+I KP N +++L  ++  + K+ L 
Sbjct: 64  LSHIRDLGLSIPAIVMTSFNDVRTAVRSIQLGAFDYITKPVNPDELLMVIKNSLTKKDLK 123

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
                    DF       I G S   + L + I   AP+  SV+I+GESGTGKE  AR +
Sbjct: 124 SVEPKETNSDF-------IKGKSAIADKLYEHINLVAPTDMSVIIQGESGTGKEFAARTL 176

Query: 197 HEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H+ S R   PFV I+CGA++ +L  SELFGH  GAFTGA   ++G F  ANGGTLFLDE+
Sbjct: 177 HQQSKRADKPFVAIDCGALSKDLAASELFGHVKGAFTGALNDKKGQFEAANGGTLFLDEV 236

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           G +   +Q  LLR L++R ++P+GS K++ V+VR++ ATN +L   ++ G FR DLY+RL
Sbjct: 237 GNLSYEVQIKLLRALQERVIQPLGSTKQIPVNVRIITATNDDLANSMQQGEFREDLYHRL 296

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           N  KI++ PLR+R  DL   +  F ++   +L   +   + E  + +  YDWPGN+REL 
Sbjct: 297 NEFKIQLPPLRDRGGDLELFINHFIQLSNRDLERNVKSVSSEAKALLLSYDWPGNLRELS 356

Query: 376 NLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPL 435
           N+I+R +LL         ++N LP     E+ +S  + S  + G++    ++   N    
Sbjct: 357 NVIKRMVLLSPGDV---AQINALP----DEMMISVHHQS--APGNSSDLKAVNEQN---- 403

Query: 436 SAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESE 478
              EKA I + +     NKS AA+ L + RKTL  K + +  E
Sbjct: 404 ---EKALITETLIKVRHNKSKAAKILNIDRKTLYAKMERYGIE 443