Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  553 bits (1426), Expect = e-162
 Identities = 282/464 (60%), Positives = 349/464 (75%), Gaps = 23/464 (4%)

Query: 12  LYQAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPG 71
           L  A SVL+VDDE GM+  LKKALSK F+ V+ A S+E+AE LR   H+DLLI+DI LPG
Sbjct: 27  LPSAVSVLIVDDEPGMRSFLKKALSKKFALVETAGSVEDAEQLRSRCHFDLLIVDIRLPG 86

Query: 72  RSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCM 131
           RSGIEW+EA +D + R+D+IFMTG+AD++ AI AL+ GASDFI+KPF+LEQM++AV RC+
Sbjct: 87  RSGIEWDEALSDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCI 146

Query: 132 NKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKEL 191
            +RL +R    L+R+     ++ IIGSS     +K  I + AP+ A +LIEGESGTGKEL
Sbjct: 147 ERRLLKRENLMLRREVSIGQSSTIIGSSDAMMEVKHVIERVAPTNAVILIEGESGTGKEL 206

Query: 192 VARGIHEASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           VAR +H  SGRQGPFVP+NCGAIAPELLESELFGH +G+FTGAK +REGLF  A+GGT+F
Sbjct: 207 VARQLHLLSGRQGPFVPVNCGAIAPELLESELFGHAAGSFTGAKGNREGLFSFASGGTIF 266

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEIGEMPL MQ +LLRVLEQR +RPVGSEKE+N+DVRV+AATNR L  EVE G FR DL
Sbjct: 267 LDEIGEMPLKMQTALLRVLEQRTIRPVGSEKEINIDVRVLAATNRKLADEVEAGNFRRDL 326

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           +YRLNVL I + PLRER +D+ EL   FT++L AELG+    W++ED+  +Q ++WPGNI
Sbjct: 327 FYRLNVLDIVIPPLRERPEDVVELTHHFTRLLAAELGVKEVVWSHEDMLKLQQHEWPGNI 386

Query: 372 RELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPN 431
           REL+N+IERC+LLGKPPA YW+                Q   SE +         LGYP 
Sbjct: 387 RELRNMIERCILLGKPPAEYWK----------------QQPKSEAT-------GELGYPL 423

Query: 432 DWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
           DW L  VEK H+  +V LH+GNKSAAARDLGV+RKTL+RKYKEW
Sbjct: 424 DWSLKEVEKHHVTSVVDLHQGNKSAAARDLGVSRKTLDRKYKEW 467