Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  271 bits (693), Expect = 3e-77
 Identities = 169/464 (36%), Positives = 258/464 (55%), Gaps = 28/464 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE   + ++ + L+     V+ A S+E+A V+      DL+  D  L   +G++ 
Sbjct: 8   ILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLGQLTGMDL 67

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN----K 133
                        I  T +  +  A+ A++ GA D++ KP+  + +L A+++       K
Sbjct: 68  LNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSIALK 127

Query: 134 RLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
           R N RL   L    Q+     ++G S   + + QR+ + + + A+VLI GESGTGKEL A
Sbjct: 128 RQNRRLSSELS---QQQELVGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAA 184

Query: 194 RGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R +++ S R   PFV INCGAI   L E+ELFG   GA+TGA   + G    A+GGT+FL
Sbjct: 185 RALYQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFL 244

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIGE+PL  Q  LLR L++  +  +G   E+ +DVRV+AAT+R+LQQEV  GRFR DLY
Sbjct: 245 DEIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLY 304

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           YRLNV+ I +  LRER +D+  L+  F K+   + GM +PK + + + S+ D+ WPGN+R
Sbjct: 305 YRLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVR 364

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL N IER +LLG       +EL   P   +P  T                 P  G   +
Sbjct: 365 ELANRIERFVLLG-DEEEMVQELGAAP---QPLDT------------KRFVLPEAGI--E 406

Query: 433 WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
           W   + EK  ++Q +   EGN++ AA+ LG++ K    + ++++
Sbjct: 407 W--ESFEKDCLRQALDRFEGNRTKAAKCLGLSYKAFLYRLEKYQ 448