Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  271 bits (694), Expect = 3e-77
 Identities = 173/472 (36%), Positives = 256/472 (54%), Gaps = 32/472 (6%)

Query: 9   QTHLYQAFSVLLVDDE--VGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILD 66
           Q  ++  + +L+VDDE  +G  LV    L  +  R    +  ++  +   ++   ++I D
Sbjct: 2   QNQVFNQYDILIVDDEPLIGSALVQLFELESY--RALALTDAKQIGLGLPDNWPGIVISD 59

Query: 67  INLPGRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQA 126
           +N+P   G+         D    +I +TG  D+  A+ ALK GA DFI KPFN E ML  
Sbjct: 60  VNMPDIDGLSLMRTLLAQDKDIPIILLTGHGDIAMAVQALKQGAYDFIEKPFNNEHMLDI 119

Query: 127 VQRCMNKRLNERLQYALQRDFQRHCTT--QIIGSSVQTELLKQRIVQFAPSRASVLIEGE 184
            +R + KR       +L+R+ +   T   +I+G S   + ++  I Q     A VLIEGE
Sbjct: 120 AKRALEKRALTLENRSLKRELESQSTPGPRILGHSPGIKQMRHIIHQVIDMPADVLIEGE 179

Query: 185 SGTGKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFR 243
           +GTGKELVAR +H+ S R +  FV INCGAI   ++ESELFG  SGAFTGA K+R G F 
Sbjct: 180 TGTGKELVARYLHDHSPRAEANFVAINCGAIPETIIESELFGAESGAFTGADKTRIGKFE 239

Query: 244 VANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVE 303
            ANGGTLFLDEI   PL++Q  LLRVLE R V  +GS K +++D+R++AAT  +L+   +
Sbjct: 240 YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIDLDIRIIAATKVDLKSLCD 299

Query: 304 NGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQ 363
            G FR DL YRLN++ + +  LRER++D+  L   F ++  A     +     E  + + 
Sbjct: 300 TGEFRQDLLYRLNLVTVPIPALRERREDIGLLFLHFARVASARYHKALIPLTAEYTAQLV 359

Query: 364 DYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVT 423
            +DWPGN+REL+NL ER +LLG P A +   L             S   N+ +SL   V 
Sbjct: 360 SHDWPGNVRELRNLAERYVLLG-PEAAFATSLG-----------QSSQLNANMSLQQRV- 406

Query: 424 QPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
                          E+  I++ ++ ++G+       L + RKTL  K +++
Sbjct: 407 ------------EFFERLLIEEALSNNKGSIKLTMEQLELPRKTLYDKMQKF 446