Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  275 bits (704), Expect = 2e-78
 Identities = 168/453 (37%), Positives = 259/453 (57%), Gaps = 24/453 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           VL+VDDE  ++ ++   LS+     D A ++ EA        Y L + D+ LP   G+E 
Sbjct: 17  VLVVDDEADIRELVDLTLSRMGLAADCAGTVAEAREFLARESYQLCLTDMRLPDGEGLEL 76

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                +      V  +T F   E A++ALK GA D++ KP  L+Q+   ++  ++  +  
Sbjct: 77  VRLIGEQYSETPVAVITAFGSTENAVAALKAGAFDYLAKPVALDQLRTLIKSAIDLPVAS 136

Query: 138 RLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIH 197
             + A + +       Q++G S     +++ I + A S+A V I GESG GKEL AR IH
Sbjct: 137 AAEGAPRSE-----ALQLLGDSRAMSTVREIIAKLARSQAPVYISGESGCGKELAARLIH 191

Query: 198 EASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIG 256
           E S R Q PFVP+NCGAI   L+ESE FG+  GAFTGA++ REG F+ A GGTLFLDE+ 
Sbjct: 192 EQSNRSQAPFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDREGFFQAAGGGTLFLDEVA 251

Query: 257 EMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLN 316
           ++PL+MQ  LLR ++++ VR VG+  E  VDVR++ AT+++L+  VE G FR DLYYRLN
Sbjct: 252 DLPLSMQVKLLRAIQEKRVRKVGATVEEAVDVRLICATHQDLKACVEAGTFRQDLYYRLN 311

Query: 317 VLKIEVSPLRERKQDLHELLPFFTKMLCAEL-GMPMPKWAYEDISSMQDYDWPGNIRELK 375
           V+++ + PLRER +D+ +L       L  +   +P+   A    +++  Y +PGN+REL+
Sbjct: 312 VIELRMPPLRERAEDIPQLARACLDRLAHQASALPLTSAAE---AALCRYTFPGNVRELE 368

Query: 376 NLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPL 435
           N++ER   L           +G  I  E ++ +S +++     G   ++   G   D  L
Sbjct: 369 NILERATAL----------CSGSEI-DEGDLQLSLADDGHPDAG---SEGRGGESLDTYL 414

Query: 436 SAVEKAHIQQIVALHEGNKSAAARDLGVARKTL 468
             +E+  IQ+ V   +GN++AAAR LG+  ++L
Sbjct: 415 DRLERQAIQEAVVQTQGNRTAAARLLGITFRSL 447