Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  273 bits (699), Expect = 7e-78
 Identities = 175/467 (37%), Positives = 257/467 (55%), Gaps = 33/467 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWF--SRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSG 74
           ++L+VDDE      L + L   F  + V +A+S +    L G     +L+ D+ +P   G
Sbjct: 7   TILVVDDEADFANGLARQLRAGFPDAEVLVATSGKAGLDLLGRSDPAVLLTDLRMPDMDG 66

Query: 75  IEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAV----QRC 130
           +E        D    VI +T    +ETA++ALK GA DF+ KP   E + +AV    +RC
Sbjct: 67  LELMAHAQTQDATPSVILLTAHGTIETAVTALKNGAYDFLTKPVRREDLYRAVSKGLERC 126

Query: 131 MNKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKE 190
              R N +L+  + R         +IG +     LK+ I   A S  +VL+ GESGTGKE
Sbjct: 127 RLLRENRQLREEMSRTGMERT---LIGETPAMRRLKETIAAVAASDYTVLVRGESGTGKE 183

Query: 191 LVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGT 249
           LVA  IH  SGR Q P V ++C AI  +LLESELFGH  GAFTGA++SR+GLF  A GGT
Sbjct: 184 LVAASIHALSGRAQRPIVSVHCPAIPDQLLESELFGHVKGAFTGAERSRKGLFMSAAGGT 243

Query: 250 LFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRG 309
           + LDEIG++   +Q  LLRVL++  +RPVGS   V VDVR++A+TN+ L+  +++G FR 
Sbjct: 244 IVLDEIGDISPGIQTKLLRVLQEHEIRPVGSSGTVKVDVRIIASTNQALEARIKSGEFRE 303

Query: 310 DLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPG 369
           DL+YRLNVL I   PLR+R  D+  L   F    C E+ +   + + E ++ +   +WPG
Sbjct: 304 DLFYRLNVLTIHTPPLRDRADDIPLLADHFLVQTCREMQIAAKRLSPEAMACLCGREWPG 363

Query: 370 NIRELKNLIERCLLLGKPPA---HYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPS 426
           N+REL+N + R  +    P     + R ++G    A P                 VT+P+
Sbjct: 364 NVRELQNFVRRLAVFCPGPTVEMAHLRLVDGPADCAAP-----------------VTEPT 406

Query: 427 LGYPNDWPLSAVE---KAHIQQIVALHEGNKSAAARDLGVARKTLER 470
           L    D     V+   + ++++++   EGN S AAR  G+ R +L++
Sbjct: 407 LTPYKDAKAHVVDEFTRRYVERLLERTEGNISEAARISGLERVSLQK 453