Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  271 bits (694), Expect = 3e-77
 Identities = 185/492 (37%), Positives = 253/492 (51%), Gaps = 44/492 (8%)

Query: 11  HLYQAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLP 70
           H      VL+VDD+ G+   L+ ALS     V  A+S EEA  L  EH  DL++ D+ + 
Sbjct: 39  HARTPLDVLVVDDDSGILTTLRLALSAAGCPVRTAASAEEALALLAEHPADLVLTDVRME 98

Query: 71  GRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRC 130
           G SGI+           A  + MT FA  E A++A+K GA D++ KPF++EQ+   V + 
Sbjct: 99  GASGIDLVREVRALLPDALCVVMTAFASFENAVAAIKAGAFDYLPKPFSVEQLEHLVGKV 158

Query: 131 MN----KRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQ-FAPSRASVLIEGES 185
                 +R N RL+ A   D          G +    L  Q +V+  APS A+VL+ GE+
Sbjct: 159 ATVVALRRENARLRAAGASDAAGAGGDWFAGLTAPATLALQTLVERIAPSEATVLLTGET 218

Query: 186 GTGKELVARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRV 244
           GTGK  +AR IH  S R G PFV + C A+A  L ESE+FGH  GAFTGA +   G F +
Sbjct: 219 GTGKTALARAIHARSARAGRPFVEVTCTALAESLFESEVFGHVRGAFTGAVRDHAGKFEL 278

Query: 245 ANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVEN 304
           A GGTLFLDE+GE+    QA LLR LE R +  VG  + + +DVR++AATNR+L +    
Sbjct: 279 AEGGTLFLDEVGELSPASQAKLLRFLEDRVIERVGGTRPLRLDVRIIAATNRDLARLCRE 338

Query: 305 GRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYED------ 358
           G FR DLYYRLNV +  V PLR+R  D+  L     +     LG+        D      
Sbjct: 339 GAFREDLYYRLNVFECVVPPLRDRPDDIAPLAARLFRTASVRLGVDTGSEGAHDAVASGE 398

Query: 359 ---------ISSMQDYDWPGNIRELKNLIERCLLL--GKPPA-----HYWRELNGLPIYA 402
                    + ++  + WPGN+REL+N +ER  LL  G+ P         R   GLP   
Sbjct: 399 GLAPLPPAVLHALLAHRWPGNVRELRNAMERMALLAAGRQPGLADLPDAVRAAAGLP--- 455

Query: 403 EPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLG 462
                +      +   GD+   P+        L  +E+AHI++++A  E N   AA  LG
Sbjct: 456 ----PLGAGGLPQRDDGDDARLPT--------LRELEEAHIRRVLAT-ERNMERAAAILG 502

Query: 463 VARKTLERKYKE 474
           +   TL RK KE
Sbjct: 503 ITTVTLWRKRKE 514