Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  294 bits (753), Expect = 4e-84
 Identities = 177/460 (38%), Positives = 263/460 (57%), Gaps = 14/460 (3%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L++DDE    LVL+  L+     V   +  E       E   D+++ D+ +P  +G E 
Sbjct: 7   LLVLDDEKNYLLVLEALLTDAGYTVTALNDPETGLAFLEESEVDVIVTDMKMPKITGREV 66

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN-KRLN 136
            E          V+ MT F  +E+A+  +K GA D+I KPF+ +++L +V       R++
Sbjct: 67  LEQVKKNWPHIPVLIMTAFGSIESAVEVMKYGAFDYITKPFSNDELLLSVHNAAELSRMH 126

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
            + +   +   +R+   QIIG S         + + APSR++VLI GESGTGKELVAR I
Sbjct: 127 RQYRVLRENLEERYGMHQIIGKSRAIRETLGMVDRAAPSRSTVLISGESGTGKELVARAI 186

Query: 197 HEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H +S R +GPFV +NC A+ P +LESELFGH  G+FTGA   R G F  A GGTLFLDEI
Sbjct: 187 HFSSPRNKGPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQAGGGTLFLDEI 246

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           GE+   +Q  LLRVL++R    VG  +EV VD+R+VAATN+NLQ+EVE G FR DL+YRL
Sbjct: 247 GELTPELQVKLLRVLQERRFERVGGTEEVEVDIRIVAATNKNLQEEVEKGNFREDLFYRL 306

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           NV+ I + PLRER++D+H L+  F   L  E G+    +  E +  M  Y+WPGNIR+L+
Sbjct: 307 NVVHIALPPLRERREDIHLLVAHFVDKLARENGVTPKTFTPEALDYMTGYEWPGNIRQLQ 366

Query: 376 NLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPL 435
           N++ERCL+L          ++G  I  +      +   S++    ++    L   +   L
Sbjct: 367 NVVERCLVL----------VSGDTIRVDDLPPELRDEESQLKSAVDLLPVQLDLAD--TL 414

Query: 436 SAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
             +E A I++ +   +  +  AA  L +++  L+ K K++
Sbjct: 415 ERIEAALIRRALVRADFVQVKAAELLAISKSLLQYKLKKY 454