Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  294 bits (752), Expect = 5e-84
 Identities = 187/481 (38%), Positives = 263/481 (54%), Gaps = 27/481 (5%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           ++L+VDD+   + +L+  L  W    + A   E A     +  +D +++D+ +    GI 
Sbjct: 5   TILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMDGIA 64

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCM----- 131
                 D +    V+ MT F+ ++TA+ AL+ GA D+++KP + + +   ++R +     
Sbjct: 65  ALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRL 124

Query: 132 ---NKRLNERL--QYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESG 186
              N+ L ERL  Q         H    IIG S     L + I   APS A+VLI GESG
Sbjct: 125 ASENRELRERLSSQGGAGAPGASH---GIIGRSAPMHELVEMIATVAPSEATVLITGESG 181

Query: 187 TGKELVARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVA 245
           TGKELVAR +H AS R   P V +NC A+   LLESELFGH  GAFTGA + REG F  A
Sbjct: 182 TGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQA 241

Query: 246 NGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENG 305
           +GGTLFLDEIGEMPLT+QA LLR L+Q  V+ VGS+  + VDVRV+AATNR+L++E   G
Sbjct: 242 DGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAG 301

Query: 306 RFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDY 365
           RFR DLYYRLNV+ + V  LRER  D+  L  FF      +    +  +  + +  +  +
Sbjct: 302 RFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRH 361

Query: 366 DWPGNIRELKNLIERCLLLG--------KPPAHYWRELNGLPIYAEPEVTMSQSNNSEIS 417
           DWPGN+REL+N IER ++L         + P H+    +G+        T      +  +
Sbjct: 362 DWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAPA 421

Query: 418 LGDNVTQPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWES 477
            GD +  P  G      L  +E+  I   +     NKS AAR LG+ R TL  K K+++ 
Sbjct: 422 DGDGLA-PYAGL----SLEDLERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYDL 476

Query: 478 E 478
           E
Sbjct: 477 E 477