Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  285 bits (728), Expect = 3e-81
 Identities = 178/477 (37%), Positives = 264/477 (55%), Gaps = 21/477 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE   +  L  AL +       A++  EA  L     +DL++ D+ + G  G++ 
Sbjct: 39  ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLDL 98

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR-LN 136
             A        +V+ +TG+  ++TA+ A+  GA  ++ KP++L +    VQ+ + KR L 
Sbjct: 99  LRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRRLR 158

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
           + +    ++  +R     ++GS+   + LK+ I Q APS  +VLI GE+GTGKEL AR +
Sbjct: 159 QEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAARMV 218

Query: 197 HEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H  S R +  F+ INCGA   ELLESELFGH  GAF+GA + R+GLF  A GGTLFLDE+
Sbjct: 219 HLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLDEV 278

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           GEM L MQ  LLR +++R +R VG   ++ VDVR++AATN++L  E   GRFR DLYYRL
Sbjct: 279 GEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYYRL 338

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           NV+ + + PL ER +D+  L  +F +    + G P P  A E +  +  Y +PGN+REL 
Sbjct: 339 NVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRELH 398

Query: 376 NLIERCLLLGK----PPAHYWRELNGLPIY-------------AEPEVTMSQSNNSEISL 418
           N+IER  +L       PA    +L  L                A P + +     + +  
Sbjct: 399 NIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAARMPG 458

Query: 419 GDNVTQPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
           G        G P    L   E+AHI+ ++ L  GN++ AA+ L + R +L RK K +
Sbjct: 459 GAGEGMTPDGRP--MTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRY 513