Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  286 bits (732), Expect = 1e-81
 Identities = 184/468 (39%), Positives = 264/468 (56%), Gaps = 30/468 (6%)

Query: 17  SVLLVDDE----VGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGR 72
           SVL+VDDE    VG+  +L      W    D+  S EEA        Y +LI D+ +PG 
Sbjct: 11  SVLVVDDERVFAVGLARLLSTQFPDW--TFDVRCSGEEALSALVHGDYAVLITDLRMPGL 68

Query: 73  SGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN 132
           SG          D    VI +T F  +ETA++ALK GA DF+ KP + E + + V + M 
Sbjct: 69  SGQTLMREALAQDPALTVIMLTAFGSVETAVAALKQGAYDFLTKPIDQEHLFRVVGKAME 128

Query: 133 K----RLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTG 188
           +    R N RL+   Q+         +IG S   + L++ I   A S  +VLI GESGTG
Sbjct: 129 RGVLLRENGRLR---QKAADGDLGPMLIGKSPAMQRLRKSIAAVAASDYTVLIRGESGTG 185

Query: 189 KELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANG 247
           KELVAR +   S R  GPF+ +NC AI   LLESELFGH  GAFTGA ++R+GLF  A+ 
Sbjct: 186 KELVARAVQSLSQRADGPFIMVNCPAIPDALLESELFGHVKGAFTGADRNRKGLFMAADK 245

Query: 248 GTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRF 307
           GT+ LDEIG++P ++Q+ LLRV+++  VRPVG+ +   V+VR+VA+TNRNL+ ++ +G F
Sbjct: 246 GTILLDEIGDIPASVQSKLLRVIQEGEVRPVGTNEAQRVNVRIVASTNRNLEAKIADGSF 305

Query: 308 RGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDW 367
           R DLY+RLNVL I V PLRER +D+  +   F   +C ELG+P  +++ E +S +    W
Sbjct: 306 REDLYFRLNVLTINVPPLRERIEDIPHIASHFLFRVCNELGVPEKEFSNEALSYLSCRPW 365

Query: 368 PGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSL 427
           PGN+REL NL+ R  +           + G  I+      M    ++E   G   +    
Sbjct: 366 PGNVRELLNLVRRMAVFCP-----GERIEGAFIH-----RMEHGADTEPECGAGFSP--- 412

Query: 428 GYPNDWPLSAVE--KAHIQQIVALHEGNKSAAARDLGVARKTLERKYK 473
            Y +   ++  E  ++++ +++    GN S AAR  GV R TL++  K
Sbjct: 413 -YKDAKQVAVDEFTRSYVHRLLEHTHGNISEAARLSGVERFTLQKILK 459