Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  282 bits (721), Expect = 2e-80
 Identities = 178/482 (36%), Positives = 271/482 (56%), Gaps = 32/482 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE+ ++   ++ L+     V  AS+ E+   L  E   +L+I+D+ +PG  G+  
Sbjct: 4   ILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLTA 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN--KRL 135
             A  + D R  V+ MT ++  ETAI A KLGA D+ILKPF +  +L  +++ +   +R+
Sbjct: 64  LRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRRM 123

Query: 136 NERLQYALQRDF---QRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
             R+      D    Q      ++G+S     + + I + AP+ A VL+ GESGTGKELV
Sbjct: 124 RARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELV 183

Query: 193 ARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR +++ S R + PF+ INC AI   LLESELFG+  GAFTGA   R G    ANGGT+F
Sbjct: 184 ARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVF 243

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEIG+MPL +QA LLR+L+++ +  +G  + + VDVR++AATN +L+  V +GRFR DL
Sbjct: 244 LDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDL 303

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           YYRL V+ + + PLRER +D+  L  +F      E+ MP P    E ++ ++   WPGN+
Sbjct: 304 YYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGNV 363

Query: 372 RELKNLIERCLL------LGKPPAHYWRELN------------GLPIYAEPEVTMSQSNN 413
           REL N + + L+      LG+P      E +             L + A+  +       
Sbjct: 364 RELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRT 423

Query: 414 SEISLGDNVTQPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYK 473
              S GDNV         D  +  V +  +++ + L  GN++ AAR LG++R TL  K +
Sbjct: 424 LSESDGDNVF--------DSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIE 475

Query: 474 EW 475
           ++
Sbjct: 476 KY 477