Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  284 bits (727), Expect = 4e-81
 Identities = 189/468 (40%), Positives = 260/468 (55%), Gaps = 35/468 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SVLLV+DE+ M L ++ ALS+    V  A   E+A+ L  +  +DL+I D+ LPG +G+E
Sbjct: 5   SVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGME 64

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN---- 132
             E   +      VI +T F ++E A+ A+K GA DF+ KPF  + +L AV+R       
Sbjct: 65  LLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDL 124

Query: 133 KRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
           KR N RL+   +RD       + IG S     + +RI   A S   VL+ G SG+GKELV
Sbjct: 125 KRENARLRG--ERD-----DGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELV 177

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           A  +H  S R+  PF+ INC A+   LLESELFGH  GAFTGA+++R+G F  A+GGTLF
Sbjct: 178 AGALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLF 237

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
            DE GEMPL +QA LLRVLE + V PVG      VDVR V AT R+L++ +  G FR DL
Sbjct: 238 FDEAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDL 297

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           YYR+NV+ + + PLRER  D+  L   F +  CA+    +  ++ +  +++  YD+PGN+
Sbjct: 298 YYRINVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQV-TFSEQARNALLAYDYPGNV 356

Query: 372 RELKNLIERCLLL-GKPPAHYWRELNGLPIYAEPEVTMSQSNNSE----ISLGDNVTQPS 426
           REL+N IER ++L  +   H    +  LP         SQ    E    + L D V Q  
Sbjct: 357 RELRNAIERAVILCAEDKIH----VGHLPKRIRDATQASQEQQPEETRFVQLADGVAQ-- 410

Query: 427 LGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
                       EK  I + +    G +  AA  LG+ RK L  K KE
Sbjct: 411 -----------FEKKRILEALQKTGGRRIRAAELLGITRKQLWLKLKE 447