Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  294 bits (753), Expect = 4e-84
 Identities = 186/472 (39%), Positives = 269/472 (56%), Gaps = 20/472 (4%)

Query: 16  FSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGI 75
           ++VL VDDE  +  +L+K LS     V +A+S  +A        Y++++LDI LP   GI
Sbjct: 5   YTVLAVDDEPSIGKLLEKELSTPTRTVHVATSARQARERLRRATYEVVVLDIRLPDADGI 64

Query: 76  EWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL 135
           E+           +VI +TG  +++ A+ A+KLGA D+I KPFNL ++   V+R   +  
Sbjct: 65  EFMVELRQRYPDTEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQRAF 124

Query: 136 --NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
             NE       RD  R   T +IG+S   + ++  I + AP+   VLI G+SG GKE+ A
Sbjct: 125 LRNENRALRHARDGARPAVT-LIGNSQGIKEVRYLIEKVAPTDVPVLITGDSGAGKEVAA 183

Query: 194 RGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
             I     R   PF+  NC  +  EL  SELFGH  G+FTGA +SR+GL   AN GTLFL
Sbjct: 184 HAIQSLGSRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTLFL 243

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIGE+P+ +QASLLRVLE +  R VG +   + D+R++ ATNR+L  EVE GRF   LY
Sbjct: 244 DEIGELPVEVQASLLRVLENKTYRRVGEKDHRSCDIRLIFATNRSLAGEVEAGRFHEALY 303

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYED--ISSMQDYDWPGN 370
           +R+NV  IE+ PLR+RK+D+  L  FF     A LG         D  ++ +  Y WPGN
Sbjct: 304 HRINVFNIEMPPLRDRKEDIPLLAEFF----LARLGNGRDDLRISDRAMACLMQYAWPGN 359

Query: 371 IRELKNLIERCLLLGK----PPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPS 426
           +REL+N++ER ++L +          REL GL   A    + +       + G+   Q  
Sbjct: 360 VRELRNVLERSIILAENNLITEHALPRELAGLAGGA----SGAGGGMGGGAAGNIAGQHG 415

Query: 427 LGYPNDWPLS--AVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
            G  +  PL+  A+E+ HI +I+  ++ N+S AA  LG++RKTL RK +E++
Sbjct: 416 AGGESQGPLTLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMREYD 467