Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  271 bits (694), Expect = 3e-77
 Identities = 149/371 (40%), Positives = 232/371 (62%), Gaps = 2/371 (0%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L++DDE G +L+++  +      V+ A S EE      +   ++++LD+ +PG  G E 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDGQET 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN-KRLN 136
                +      V+ +T F  + +A+ A+K GA D++ KP + E++   +++  +  RL 
Sbjct: 64  LARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFGRLL 123

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
           E  +   +R      T  I+G+S     ++  I Q  PS A++LI GESGTGKEL+A+G+
Sbjct: 124 EENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQGL 183

Query: 197 HEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H+AS R   P V +NC A+   LLESELFG+  GAFTGA + + G F++A GGTLFLDEI
Sbjct: 184 HDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLDEI 243

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           GE+PL +Q+ LLR L++R V P+G+ + V VDVR++AATNR+L++ VE G FR DL++RL
Sbjct: 244 GELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFFRL 303

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           NVL++   PLR+R +DL  L     + LC +    +   + E + ++  Y WPGN+REL+
Sbjct: 304 NVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVRELE 363

Query: 376 NLIERCLLLGK 386
           N++ER L+L +
Sbjct: 364 NVLERALILSR 374



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 428 GYPNDWP--LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
           G P  +P  L   E+  + + + +H G++   A  LG++R+TL+ K K++
Sbjct: 472 GAPGAYPGSLDDAERDALLRALEVHGGHRERTADALGISRRTLQYKLKKF 521