Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  283 bits (723), Expect = 1e-80
 Identities = 166/466 (35%), Positives = 266/466 (57%), Gaps = 18/466 (3%)

Query: 16  FSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGI 75
           ++ L+VDDE  ++ +L+  L++       A  +  A+ L  ++   L + D+NLP  +GI
Sbjct: 4   YTALIVDDEPDIRELLEITLTRMGITTLTAPDLTSAQKLLEQNTTHLCLTDMNLPDGNGI 63

Query: 76  EWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL 135
           E  +          V  +T + +++TAI +LK GA DF+ KP  L ++ + V        
Sbjct: 64  ELVQWIQKHSPATPVAVITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELV-------- 115

Query: 136 NERLQYALQRDFQRHCTTQ---IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
           N  L+ A  +        +   ++G S +   L+ +  + A S+A V I GESG+GKELV
Sbjct: 116 NSALKLAEPKADAEDTADEPGLLLGKSPEIRKLRNQTRKLARSQAPVFISGESGSGKELV 175

Query: 193 ARGIH-EASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR IH +   R+GPF+ +NCGAI  EL+ESE FGH  G+FTGA ++++GLFR ANGGTLF
Sbjct: 176 ARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLF 235

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDE+ ++PL MQ  LLR ++++AVRPVG  KEV VD+RV++AT++NL + V+ G FR DL
Sbjct: 236 LDEVADLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDL 295

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           +YR+NV+++ V PLRER  D+  L     + +  E            +  ++ YD+PGN+
Sbjct: 296 FYRINVIELSVPPLRERPDDISLLSNHILERIAKEYECDPASLTPAAVDRLRSYDFPGNV 355

Query: 372 RELKNLIERCLLLGKPPAHYWREL---NGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLG 428
           REL+N++ER   L         +L   NG+   A     +++    ++  G+ +  P   
Sbjct: 356 RELENVLERAFTLCDADQIDADDLHLGNGVQHAASASQIIAE---GQVGDGEGIAVPDGE 412

Query: 429 YPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
              +  L  +E+  I++ +     NK+AAA+ LG++ + L  + K+
Sbjct: 413 IDLEGYLEKIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKK 458