Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  267 bits (682), Expect = 7e-76
 Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  ++K L      V  A+S+EEAE       +DL+I D+ LPG +G E 
Sbjct: 4   ILIVEDEDIIRSAVRKLLLHAGYEVADAASVEEAEQNHEPDQFDLIISDLRLPGAAGTE- 62

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                +      V+ MT +A L +A+ ++K+GA ++I KPF+ ++ML AV+  + ++   
Sbjct: 63  ---LINRAPNTPVLIMTSYASLRSAVDSMKMGAVEYIAKPFDHDEMLAAVENILARKPAG 119

Query: 138 RLQY-----ALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
           R        AL+          + G     + +   I + AP+  +VLI+GESGTGKEL 
Sbjct: 120 RNSGDDSAPALETPESSDPANIMFGQCEPMQRVFTLIRKVAPTETTVLIQGESGTGKELA 179

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR +H  S R   P + +NC AI   L+ESELFGH  GAFTGA  +R GL   A+GG+LF
Sbjct: 180 ARALHLLSPRAAKPLISVNCAAIPESLIESELFGHEKGAFTGAVSARTGLIEAADGGSLF 239

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEIGE+P   QA LLRVL++  +R VGS +   V+VR++AAT+RNL+     G FR DL
Sbjct: 240 LDEIGELPAEAQARLLRVLQESEIRKVGSTQSRTVNVRMIAATHRNLKAMTRTGEFREDL 299

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           YYRLNV++I + PLRER+ D+  L   F K     +G P    + E + +++ + WPGN+
Sbjct: 300 YYRLNVMQIRIPPLRERQSDILGLARRFLKRQGERMGKPDLNLSPEAMRALERHRWPGNV 359

Query: 372 RELKNLIERCLLL 384
           REL+N IER  +L
Sbjct: 360 RELENAIERATIL 372