Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  261 bits (667), Expect = 3e-74
 Identities = 148/374 (39%), Positives = 222/374 (59%), Gaps = 13/374 (3%)

Query: 17  SVLLVDDEVGMQLVLKKALSKW----FSRVDLASSIEEAEVLRGEHHYDLLILDINLPGR 72
           +VL++DDE  +   L  +L +     F+  D  S + E E    +   D+++LD+ LP +
Sbjct: 5   TVLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIE----KRTPDVVLLDLKLPDQ 60

Query: 73  SGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRC-M 131
           SG E  +           I ++   D   A+ A+K GA D+I KPF+L++++  +QR   
Sbjct: 61  SGFEVLDQVQALPAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQRNHK 120

Query: 132 NKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRA-SVLIEGESGTGKE 190
           +++L E + Y  +R+   H    ++G S     L  ++ +   S A +VL++G SG+GK 
Sbjct: 121 HRQLTEEVAYRREREADVH---GLVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKT 177

Query: 191 LVARGIHEASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTL 250
           L+A+ +H    R  PFV +NC ++   LLE+ELFG   GA+TGA K R GL  +ANGGTL
Sbjct: 178 LIAKALHATKDRAAPFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGTL 237

Query: 251 FLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGD 310
           FLDEIGE+PL +QA LL  LE    R VG +KE+  D+RV+AA+NR+LQ E + G FR D
Sbjct: 238 FLDEIGELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFRED 297

Query: 311 LYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGN 370
           L+YRLNV+ + +  L ER+ D+  L   F   L A+ G      + E ++++ +YDWPGN
Sbjct: 298 LFYRLNVMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPGN 357

Query: 371 IRELKNLIERCLLL 384
           IREL+N IER  +L
Sbjct: 358 IRELRNTIERLTIL 371