Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  281 bits (719), Expect = 3e-80
 Identities = 160/375 (42%), Positives = 226/375 (60%), Gaps = 3/375 (0%)

Query: 14  QAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRS 73
           Q +SVL++DDE  +  VL +       +   A+  +    L       ++I D+N+P   
Sbjct: 8   QDYSVLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLLDRDWAGVVISDVNMPQLD 67

Query: 74  GIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNK 133
           GI   +   + D    V+ +TGF D+  A++ALK GA DF+ KPFN E ML  V+R ++K
Sbjct: 68  GISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDK 127

Query: 134 RLNERLQYALQRDFQRHCTT--QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKEL 191
           R        L+++ + H     +I+G SV  + ++  I Q   + A VLIEGE+GTGKEL
Sbjct: 128 RSLTLENRKLKKELESHNVPGPRILGHSVGIQRMRHIIDQVIDTPADVLIEGETGTGKEL 187

Query: 192 VARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTL 250
           VAR +H+ S R Q  FV INCGAI   L+ESELFG  +GAFTG  K R G F  ANGGTL
Sbjct: 188 VARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGGTL 247

Query: 251 FLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGD 310
           FLDEI   PL++Q  LLRVLE R V  +GS K +++D+RV+AAT  +L+   + G+FR D
Sbjct: 248 FLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGQFRQD 307

Query: 311 LYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGN 370
           L YRLN++ + + PLR+R++D+  L   F +M  A     +     E  + +  +DWPGN
Sbjct: 308 LLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWPGN 367

Query: 371 IRELKNLIERCLLLG 385
           +REL+NL ER +LLG
Sbjct: 368 VRELRNLAERYVLLG 382