Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  257 bits (657), Expect = 5e-73
 Identities = 165/456 (36%), Positives = 256/456 (56%), Gaps = 19/456 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE  +++++          V  A+S+ EAE  +     D++ LD+ LP  +G+E 
Sbjct: 4   ILVVDDESLVRILVADTAGGMGHEVLAAASLTEAEE-KAAKGIDVVFLDVLLPDGNGLEN 62

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
              FT      +VI +TG    + A +AL+ G  D++ KP  +++++ ++ R +  R   
Sbjct: 63  VARFTRLPGTPEVIVITGHGSADGAETALRHGVWDYVQKPLKVQEVMLSLSRALAYRAG- 121

Query: 138 RLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIH 197
           R     +R  +R     I+G S         + + A S  +VLI GE+GTGKEL AR +H
Sbjct: 122 RNSATGRRPLRRDA---IVGDSPALREALDLVEEAAASTVNVLITGETGTGKELFARAVH 178

Query: 198 EASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIG 256
             S R + P V ++C ++   L+ES+LFGH  GAFTGA+++ EGL R A+GGTLFLDE G
Sbjct: 179 ANSARCESPLVTLDCASLTENLVESQLFGHVRGAFTGAERNSEGLLRQAHGGTLFLDEAG 238

Query: 257 EMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLN 316
           ++PL MQ S LR LE R  RPVGS  EV+ D R+VAATN+NL +      FR DL YRL 
Sbjct: 239 DLPLAMQGSFLRALELRRFRPVGSAHEVSSDFRLVAATNKNLHEMTRLDLFRSDLLYRLR 298

Query: 317 VLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKN 376
            L I + PLR+R  D+  L     +  CA+ G PM + A + + +++ Y WPGNIREL++
Sbjct: 299 GLTITLPPLRDRTADILPLCEHVIEGYCAQHGAPMKQMAGDFMETVERYAWPGNIRELRH 358

Query: 377 LIER-CLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPL 435
            +ER C         Y R+   LP+  E  VT++++     S  D+    + G+ +  P+
Sbjct: 359 AVERACTAAHDDSTLYARQ---LPV--EVRVTVARATIPCASEVDHCMPAAEGH-DGTPM 412

Query: 436 ------SAVEKAHIQQIVALHEGNKSAAARDLGVAR 465
                 +  E+A++ +++  H  +  AAA + G++R
Sbjct: 413 TLRDYKACAERAYVTRLLDRHGADVRAAASEAGISR 448