Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  269 bits (688), Expect = 1e-76
 Identities = 158/377 (41%), Positives = 221/377 (58%), Gaps = 18/377 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLR--GEHHYDLLILDINLPGRSGI 75
           +L+VDDE      L + +S+ F    ++ ++  AE L         LL+ D+ +P   G+
Sbjct: 9   ILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDMDGM 68

Query: 76  EWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL 135
           E  +     D    VI +T    +ETA++ALK GA DF+ KP   E++    QR +NK L
Sbjct: 69  ELMQQAMTVDPTTSVILLTAHGSIETAVAALKNGAYDFLTKPVRREEL----QRTLNKAL 124

Query: 136 --------NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGT 187
                   N+RL+  +Q   Q     Q+IG S   + LK+ I   A +  SVLI GESGT
Sbjct: 125 ERIRILKENKRLRQMMQ---QGCIERQMIGESPVMQRLKETIAAIAATDYSVLIRGESGT 181

Query: 188 GKELVARGIHE-ASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVAN 246
           GKELVA  +H   S R+ P V +NC +I  +LLESELFGH  GAFTGA ++R GLF  A 
Sbjct: 182 GKELVADMLHRLGSRRERPLVKVNCPSIPDQLLESELFGHVKGAFTGADRTRRGLFMSAQ 241

Query: 247 GGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGR 306
            GTL LDEIG++   +Q  LLRVL++R +RPVGS     VDVR++A+TNR L++ ++ G 
Sbjct: 242 RGTLLLDEIGDIGEALQTKLLRVLQEREIRPVGSSASTLVDVRIIASTNRALEERIKQGL 301

Query: 307 FRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYD 366
           FR DL+YRLNVL I   PLRER+ D+  L   F    C EL  P+ + +   ++ +   +
Sbjct: 302 FREDLFYRLNVLTIHTPPLRERRDDIPLLADHFVAATCRELSSPVKRISPGALACLAGRE 361

Query: 367 WPGNIRELKNLIERCLL 383
           WPGN+REL+N I R ++
Sbjct: 362 WPGNVRELQNYIRRLVV 378