Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  283 bits (723), Expect = 1e-80
 Identities = 181/466 (38%), Positives = 258/466 (55%), Gaps = 29/466 (6%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           S+LLV+DE+ M+L ++ ALS+    V  A + E A        +DL+I D+ LPG SG+E
Sbjct: 5   SILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGME 64

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN---- 132
             ++  +      VI +T F ++E A+ A+K GA DF+ KPF  + +L AV+R       
Sbjct: 65  LLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFLDL 124

Query: 133 KRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
           KR N+RL+   +         + IG S     +  RI   A +   VL+ G SG+GKELV
Sbjct: 125 KRENDRLRGEREEG-------EFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELV 177

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           A  +H  S R+  PF+ INC A+  +LLESELFGH  GAFTGA+++R G F  A+GGTLF
Sbjct: 178 AGALHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLF 237

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
            DE+GEMPL +QA LLRVLE + V PVG      V+VR V AT RNL++ + +GRFR DL
Sbjct: 238 FDEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDL 297

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
           YYR+NV+ + + PLRER  D+  L   F +  CA L       + +   ++  YD+PGN+
Sbjct: 298 YYRINVVPVTLPPLRERGSDVALLTERFLRRFCA-LHERQATLSEQARLALLAYDYPGNV 356

Query: 372 RELKNLIERCLLL---GKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLG 428
           REL+N +E  +LL   G+    +  E       + P      + ++  SL + V +    
Sbjct: 357 RELRNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVAR---- 412

Query: 429 YPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
                     E+  I + +    G K  AA  LG++RK L  K KE
Sbjct: 413 ---------FERRRIMEALERTGGRKIQAADLLGISRKQLWLKLKE 449