Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  274 bits (700), Expect = 6e-78
 Identities = 174/464 (37%), Positives = 270/464 (58%), Gaps = 20/464 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDD+  ++   ++ L+     V  ASS E+   +  E   + +I+D+ +PG +G++ 
Sbjct: 4   ILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDA 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +A  + D R  VI MT +A  ETAI A K GA D+ILKPF++  +L  + + +      
Sbjct: 64  LKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRRM 123

Query: 138 RLQYALQRDFQRHCTTQ-IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
           R + A+  +       + ++G+S     + + I + AP+ A VL+ GESGTGKELVAR I
Sbjct: 124 RGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAI 183

Query: 197 HEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           ++ S R + P++ INC AI   LLESELFG+  GAFTGA   R G    A+GGT+FLDEI
Sbjct: 184 YQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEI 243

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           G+MPL +QA LLR+L++R +  +G  + + VDVR++AATN +L+  V +GRFR DLYYRL
Sbjct: 244 GDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRL 303

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
            V+ + + PLRER++D+  L  FF      E+  P P  + E ++ M+ + WPGN+REL 
Sbjct: 304 KVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELG 363

Query: 376 NLIERCLLL--GKP--PAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQ-----PS 426
           N I++ L+   G P  P    + L G+          + +   +   GD++ Q      S
Sbjct: 364 NAIQKALVFNRGAPLLPEDIRQALEGVR-------GSTSTREGDEGAGDDLLQLVRRTLS 416

Query: 427 LGYPNDWP--LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTL 468
            G  N +   +  V +  +++ +    GN++ AAR LG++R TL
Sbjct: 417 GGDDNAFETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTL 460