Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  291 bits (744), Expect = 4e-83
 Identities = 178/465 (38%), Positives = 266/465 (57%), Gaps = 24/465 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE   +  L   L K    VD A++ EEA        YDL++ D+ +    G+  
Sbjct: 5   ILVVDDEAIARDNLAILLRKRKYEVDTAANGEEAMRALAGADYDLVLTDLMMDDMDGMAL 64

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR-LN 136
                      +VI +TG+A +ETA+ A++ GA  ++ KP+ +E+    VQ+ + KR LN
Sbjct: 65  LRHIRQHHADTEVIMITGYATVETAVLAMQEGAYHYLAKPYRIEEARALVQKALEKRALN 124

Query: 137 ERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
           + +    ++  +R     I+GS+     LK+ I + AP+ ASVLI GE+GTGKEL AR +
Sbjct: 125 QEVHRLREQLRERSLPVPILGSAPCIVELKRLIAKVAPAEASVLILGETGTGKELAARMV 184

Query: 197 HEASGRQGP-FVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H  S R    F+ INCGA    LLESELFGH  GAF+GA + ++GLF  A GGTLFLDE+
Sbjct: 185 HLFSRRSDRRFLAINCGAFNDALLESELFGHEQGAFSGAARLKKGLFEAAEGGTLFLDEV 244

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           GEM L MQ  LLR L++R++R VG   ++ VDVR+VAATNR+L++E E G FR DL+YRL
Sbjct: 245 GEMSLAMQVKLLRTLQERSIRRVGGTVDIPVDVRLVAATNRDLKREAEAGTFRADLFYRL 304

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           NV+ + + PL ER+ D+  L  +FT+    ++ +  P    + + ++  Y +PGN+REL+
Sbjct: 305 NVVSLRMPPLSERRADIPLLARYFTEKSARDMQVAPPAIGQDALDALARYPFPGNVRELQ 364

Query: 376 NLIERCLLLGKPPAHYWRELNGLP--IYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           N++ER ++L         +   LP  ++  P+  M       ++L DN            
Sbjct: 365 NIMERAVVLCSDGV---IKAGHLPPDLFEAPDHVMRGDERKALTLDDN------------ 409

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESE 478
                E+ HI  ++    GN++ AAR LG+ R +L RK K +  E
Sbjct: 410 -----ERDHIMWMLEHAGGNRTLAARLLGIDRASLWRKLKRFGVE 449