Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  270 bits (689), Expect = 1e-76
 Identities = 171/464 (36%), Positives = 248/464 (53%), Gaps = 13/464 (2%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L++DDE  ++  L+  L      V  A   E           D++ LDI +PG  G+  
Sbjct: 5   ILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLTV 64

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            E          VI ++G   +ETA++A+K GA DFI KP +LE+++ A +R +  R   
Sbjct: 65  LEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMRELR 124

Query: 138 RLQYALQRDFQRHCTT-QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
           R   AL+          ++IG S     ++++I + AP+ A VLI GE+GTGKEL AR +
Sbjct: 125 RENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARAV 184

Query: 197 HEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
           H  S R   P V +NC AI  EL+ESELFGH  GAFTGA+ +R G F +A+ GTLFLDEI
Sbjct: 185 HAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDEI 244

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           G+M L  QA +LR+L++++   VG  + + VDVRVVAATN+NL++++  G FR DLYYRL
Sbjct: 245 GDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYRL 304

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
            V  + +  LRER  D+  LL  F   LC +       +  +    +  Y WPGN+REL+
Sbjct: 305 RVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRELR 364

Query: 376 NLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPL 435
           N +ER L+L     H    ++   +  E    +S S++S           + G   D  L
Sbjct: 365 NFVERMLIL-----HAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGIL 419

Query: 436 ------SAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYK 473
                 +A E   + + +    GN S  A  +G+ R  L RK K
Sbjct: 420 DFKAARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLK 463