Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  293 bits (750), Expect = 9e-84
 Identities = 185/470 (39%), Positives = 263/470 (55%), Gaps = 20/470 (4%)

Query: 15  AFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSG 74
           ++SVL VDDE  +  +L+K LS     V +A S  +A        Y++++LDI LP   G
Sbjct: 4   SYSVLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDADG 63

Query: 75  IEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR 134
           IE+           +VI +TG  +++ A+ A+KLGA D+I KPFNL ++   V+R   + 
Sbjct: 64  IEFMVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQRA 123

Query: 135 LNERLQYALQRDFQR-HCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
                  AL+    R      +IG+S   + ++  I + AP+   VLI GESG GKE+ A
Sbjct: 124 FLRNENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEVAA 183

Query: 194 RGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
             I     R   PF+  NC  +  EL  SELFGH  G+FTGA +SR+GL   AN GTLFL
Sbjct: 184 HAIQSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTLFL 243

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIGE+P+ +QASLLRVLE +  R VG +   + D+R++ ATNR L  EVE GRF   LY
Sbjct: 244 DEIGELPMEVQASLLRVLENKTYRRVGEKDHRSCDIRLIFATNRTLAGEVEAGRFHEALY 303

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYED--ISSMQDYDWPGN 370
           +R+NV  IE+ PLRERK+D+  L  FF     A LG         D  +S +  Y WPGN
Sbjct: 304 HRINVFNIEMPPLRERKEDIPLLAEFF----LARLGNGRDDLRISDRAMSCLMQYAWPGN 359

Query: 371 IRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYP 430
           +REL+N++ER ++L         E N +  +A P      +       G +    + G  
Sbjct: 360 VRELRNVLERSIILA--------ENNLITEHALPRDLAGFAGGGGGQSGVSGVPGASGAM 411

Query: 431 ND--WPLS--AVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
            +   PLS  A+E+ HI +I+  ++ N+S AA  LG++RKTL RK +E++
Sbjct: 412 GEAQGPLSLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMREYD 461