Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  280 bits (715), Expect = 1e-79
 Identities = 171/460 (37%), Positives = 256/460 (55%), Gaps = 19/460 (4%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +LL++D+   Q +L++AL +   RV   +  E+   +     +DL++ D+ LPG SG+E 
Sbjct: 5   ILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGISGVEA 64

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                +     D++ MT F+  E A+ A+KLGA DF  KPF+L+++   ++R M KR  +
Sbjct: 65  IPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKELDIVIRRAMEKRRMQ 124

Query: 138 RLQYALQRDFQRHC-TTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGI 196
               AL+   +R   T++I+G S     +K  + + AP  ++VLI GESGTGKEL+A  I
Sbjct: 125 GEIVALRETLRRDTPTSRIVGESRAMRDVKALLERIAPLESTVLIMGESGTGKELIADTI 184

Query: 197 HEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEI 255
              S R   PFV +NC AI   L E+ELFGH  GAFTGA  +  G F  A GG + LDEI
Sbjct: 185 RALSPRAANPFVKVNCAAIPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGMIMLDEI 244

Query: 256 GEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRL 315
           G+MPL +Q  LLRV+EQ+ V  +G    V +DVR++AATN+NL + V    FR DLYYRL
Sbjct: 245 GDMPLAIQPKLLRVVEQKQVERLGGRAPVPLDVRIIAATNQNLAERVREKAFREDLYYRL 304

Query: 316 NVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELK 375
           +V  + + PLR+RK D+  L  +F   L   LG+P+   + + I+ + D+DWPGN+R+L 
Sbjct: 305 SVAVVLIPPLRDRKDDIPLLAQYFVNKLEGTLGLPVHGLSPDAIAVLMDHDWPGNVRQLA 364

Query: 376 NLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSL-GYPNDWP 434
           N++ER  +            +GL    +    +  +       G NV + +L G      
Sbjct: 365 NVLERAAIAA----------DGLICARDVMAAIGTAR------GSNVDKATLSGMDLKTT 408

Query: 435 LSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
           L  VE+  I   +    G ++ AA  LG+  K L  K ++
Sbjct: 409 LRMVERNLILDALRRCHGRQTEAAVLLGLTPKNLWAKLRK 448