Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  293 bits (749), Expect = 1e-83
 Identities = 171/463 (36%), Positives = 271/463 (58%), Gaps = 18/463 (3%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L++DDE G +L+++  +      V  A S EE   L       +++LD+ +PG  G E 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLLDMRMPGMDGQET 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL-- 135
                +      V+ +T +  + +A+ A+K GA D++ KP + E+++  +++    R   
Sbjct: 64  LARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEHRRLV 123

Query: 136 --NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
             NE L+   +R  +   T  ++G+S     ++  I Q  PS A+VLI GESGTGKEL+A
Sbjct: 124 VENEELR---KRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELIA 180

Query: 194 RGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           + +H+AS R + P V +NC A+   LLESELFG+  GAFTGA K + G F++A GGTLFL
Sbjct: 181 QALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFL 240

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIGE+PL +QA LLRVL++R V P+G  + V+VDVR++AATNR+L++EV  G FR DLY
Sbjct: 241 DEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLY 300

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           +RLNVL++   PLR+R +DL +L+      LC +    +   + +   ++  + WPGN+R
Sbjct: 301 FRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVR 360

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+N++ER L+L +  +     L       EP+V   Q     +   D+ ++P       
Sbjct: 361 ELENVLERALILSRTDSLSADALPPQLFGDEPQVADMQQERPVV---DDDSRPC------ 411

Query: 433 WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
             L   EK  + + + +H G++   A  LG++R+TL+ K K++
Sbjct: 412 -SLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKF 453