Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., AAA-family response regulator tacA from Caulobacter crescentus NA1000

 Score =  271 bits (694), Expect = 3e-77
 Identities = 169/476 (35%), Positives = 268/476 (56%), Gaps = 20/476 (4%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEV-LRGEHHYDLLILDINLPGRSGI 75
           +VL+VDD+   + +++  L +    V  A   + A   L      D+++LD+ +PG +G 
Sbjct: 4   TVLVVDDDPTQRRLIQAVLERDGFAVSHAEGGDAAIAHLTSGAPADVILLDLVMPGLNGQ 63

Query: 76  EWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR- 134
           +  +          VI +T    ++T + A++ GA DF +KP + E++  +++  ++   
Sbjct: 64  DALKEMRARGFNQPVIVLTASGGVDTVVKAMQAGACDFFIKPASPERITVSIRNALSMGD 123

Query: 135 LNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
           L   ++   +R   +     +IG+S    ++K+   + A S   VLI GESG GKEL+AR
Sbjct: 124 LKGEVERLTKRAGGKTTFADLIGASPVMTMVKRMGERAAKSGIPVLITGESGVGKELIAR 183

Query: 195 GIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H +S R G PFV +NCGAI   L+ES LFGH  G+FTGA     G F+ A+GGTLFLD
Sbjct: 184 AVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFKEADGGTLFLD 243

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           E+GE+PL MQ  LLR L++  + P+GS++ + VDVR+V+ATNR+LQQ V  GRFR DL+Y
Sbjct: 244 EVGELPLDMQVKLLRALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFREDLFY 303

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV  IE   LRER++D+  L+  F +    E G  +   + E +  +  +DWPGN+R+
Sbjct: 304 RLNVFPIEAPSLRERREDIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWPGNVRQ 363

Query: 374 LKNLIERCLLLGKPP---AHYWRELNGL--PIYA------EPEVTMSQSNNSEISLGDNV 422
           L+N + R ++L   P      +  ++GL  PI A       P   + Q+ ++ ++    V
Sbjct: 364 LENTVYRAIVLADAPYLQPFDFPAISGLAAPIEAVSISPSPPPAALLQATHAAMAAA--V 421

Query: 423 TQPSLGYPND----WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
            +  +   +D      L  +E+  IQ  + ++ G+ S  AR LG+ R TL RK +E
Sbjct: 422 AEAPVRILDDRGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVRE 477