Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., rteB, two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  271 bits (693), Expect = 3e-77
 Identities = 163/469 (34%), Positives = 251/469 (53%), Gaps = 33/469 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           S+L+++D++   ++LK  LSK    V   S+I  A+        DL++ D+ LP   GI+
Sbjct: 4   SILIIEDDITFGMMLKTWLSKKGFEVSSVSNIARAQKHIEGQGADLILSDLRLPDHDGID 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
             +   +      +I MTG+AD+++A+ A+KLGA D++ KP N E++L+ +   +  +  
Sbjct: 64  LLKWMNEKGIDIPLIIMTGYADIQSAVQAMKLGARDYVAKPVNPEELLKKMSEALQAKEA 123

Query: 137 ERLQYALQRDFQRHCTTQ-----------IIGSSVQTELLKQRIVQFAPSRASVLIEGES 185
                A +   ++  +             + G S   + L   +   AP+  SVLI G S
Sbjct: 124 PTTHTAAKTSAKKGSSISSGNATETHHAYLEGESDAAKQLYNYVGLVAPTNMSVLINGSS 183

Query: 186 GTGKELVARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRV 244
           GTGKE VA  IH+ S R   PF+ ++CG+I  EL  SE FGH  G+FTGA   + G F  
Sbjct: 184 GTGKEYVAHRIHQLSKRNDKPFIAVDCGSIPKELAASEFFGHVKGSFTGALTDKTGAFVA 243

Query: 245 ANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVEN 304
           ANGGT+FLDEIG +   +Q  LLR L++R +RPVGS +EV+VD+R+V+ATN NL+Q +E 
Sbjct: 244 ANGGTIFLDEIGNLSYEVQIQLLRALQERKIRPVGSTQEVSVDIRLVSATNENLEQAIEK 303

Query: 305 GRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQD 364
           G FR DL++R+N   + +  L+ERK+D+     FF      EL   +  +  +   ++ +
Sbjct: 304 GTFREDLFHRINEFTLRMPDLKERKEDILLFANFFLDQANKELDKHLIGFDSKASQALLN 363

Query: 365 YDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQ 424
           Y WPGN+R++KN+++R  LL +       EL                  +E+     V  
Sbjct: 364 YHWPGNLRQMKNIVKRATLLAQGSFITLLEL-----------------GTELLETSTVCS 406

Query: 425 PSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYK 473
            S+   N+      EK HI + +     NKS AA+ L + RKTL  K K
Sbjct: 407 ASMALRNE----ETEKEHILEALRQTGNNKSKAAQLLNIDRKTLYNKLK 451