Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  560 bits (1443), Expect = e-164
 Identities = 290/471 (61%), Positives = 350/471 (74%), Gaps = 23/471 (4%)

Query: 5   LDLNQTHLYQAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLI 64
           +D N   L  A SVL+VDDE GM+  L KALSK F+ V+ A SIE+AE LR   H+DLLI
Sbjct: 4   IDNNLKPLPSAVSVLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLI 63

Query: 65  LDINLPGRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQML 124
           +DI LPGRSGIEW EA  +   R+DVIFMTG+ADLE AI AL+ GASDFI+KPF+LEQM+
Sbjct: 64  VDIRLPGRSGIEWHEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMM 123

Query: 125 QAVQRCMNKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGE 184
            AV RC+ +RL  R    L+R+     ++ IIGSS   + +KQ I + AP+ A VLI+GE
Sbjct: 124 SAVDRCIERRLLRRENLMLRREVSIGYSSTIIGSSEAMKSVKQVIERVAPTNAVVLIQGE 183

Query: 185 SGTGKELVARGIHEASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRV 244
           SGTGKELVAR +H  SGRQGPFVP+NCG+IAPELLESELFGHT+GAFTGAK +REGLF  
Sbjct: 184 SGTGKELVARQLHLLSGRQGPFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGLFSF 243

Query: 245 ANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVEN 304
           A+GGT+FLDEIGEMPL MQ +LLRVLEQ+A+RPVGSEKEVN+DVRV+AATNR L  EVE 
Sbjct: 244 ASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVEA 303

Query: 305 GRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQD 364
           G FR DLYYRLNVL I + PLRER +D+ EL   FT+ L AELG+    W++ED+  +Q 
Sbjct: 304 GNFRRDLYYRLNVLDILIPPLRERPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQ 363

Query: 365 YDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQ 424
           ++WPGNIREL+N+IERC+LLGKPPA YW++        + E + SQ              
Sbjct: 364 HEWPGNIRELRNMIERCILLGKPPAEYWKQ------QVKTESSASQ-------------- 403

Query: 425 PSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
              GYP DWPL  VEK H+  +V LH GNKSAAARDLGV+RKTL+RKYKEW
Sbjct: 404 ---GYPLDWPLKEVEKHHVTSVVDLHSGNKSAAARDLGVSRKTLDRKYKEW 451