Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  277 bits (708), Expect = 6e-79
 Identities = 175/466 (37%), Positives = 255/466 (54%), Gaps = 28/466 (6%)

Query: 14  QAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRS 73
           Q +SVL++DDE  +  VL +       +    +  +    L       ++I D+N+P   
Sbjct: 8   QDYSVLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLD 67

Query: 74  GIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNK 133
           GI   +     D    V+ +TGF D+  A++ALK GA DF+ KPFN E ML  V+R ++K
Sbjct: 68  GISLMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDK 127

Query: 134 RLNERLQYALQRDFQRHCTT--QIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKEL 191
           R        L+++ + H     +I+G SV    ++  I Q   + A VLIEGE+GTGKEL
Sbjct: 128 RSLTLENRKLKKELESHNVPGPRILGHSVGILRMRHIIDQVIDTPADVLIEGETGTGKEL 187

Query: 192 VARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTL 250
           VAR +H+ S R Q  FV INCGAI   L+ESELFG  +GAFTG  K R G F  ANGGTL
Sbjct: 188 VARYLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGGTL 247

Query: 251 FLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGD 310
           FLDEI   PL++Q  LLRVLE R V  +GS K +++D+RV+AAT  +L+   + G FR D
Sbjct: 248 FLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGEFRQD 307

Query: 311 LYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGN 370
           L YRLN++ + + PLR+R++D+  L   F +M  A     +     E  + +  +DWPGN
Sbjct: 308 LLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWPGN 367

Query: 371 IRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYP 430
           +REL+NL ER +LLG   A +   L   P           S ++ +SL   V        
Sbjct: 368 VRELRNLAERYVLLGGEAA-FAGSLGNAP-----------SLHTSMSLLQRV-------- 407

Query: 431 NDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
                   E+  I++ ++ ++G+       L + RKTL  K ++++
Sbjct: 408 -----EFFERVLIEEALSHNKGSIKQTMEQLELPRKTLYDKMRKYD 448