Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

 Score =  125 bits (315), Expect = 4e-33
 Identities = 110/390 (28%), Positives = 183/390 (46%), Gaps = 57/390 (14%)

Query: 284 YITAYEPIRDQYHNEIGMLYTGYLMWPFLKAYVTNILEVGIITLFLLVISGLFVYRG--- 340
           Y   Y PI +      G++++G L    L   V    +  +  L  ++ S L +  G   
Sbjct: 243 YSGIYRPILNDSGELQGVIFSGLLRHNSLVGLVN---QSNLFILIFILSSALSLGVGWLV 299

Query: 341 SRDLFRPIERIHRVVKMVQLGK-NQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIV 399
           S+ L +P+  + + V+ V  G   QR+   G D   ELA+L+  F++M ++L        
Sbjct: 300 SQRLTQPLRALSKGVRAVIDGDYRQRVPVYGSD---ELAELSSTFNHMTERL-------- 348

Query: 400 QAAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINN 459
                                 +L+H   L +Q R +    ++L ALGE+  G+AHEI N
Sbjct: 349 ---------------------GELQH---LESQLRRR----DRLHALGEVAMGLAHEIRN 380

Query: 460 PTAVILGNTELIRFELGADASRVEEE-IDAILLQIERIRNITRSLLQYSRQGGVQDEITW 518
           P  +I   T+L+     AD    ++  ++ ++ ++ RI ++    L +++          
Sbjct: 381 PLGIIKTATQLLHRR--ADLPETDKRHLEYVVSEVTRINDLITEFLDFAKPNAPMRST-- 436

Query: 519 QHVNPIIDESITLVKTGSKKRDIEFVLELKAHNS-VEVNRHQLLQILVNLQMNAIHAMNG 577
           Q V P++DE +          +I+  +E  A  + +  +  QL Q  +NL +NAI AM  
Sbjct: 437 QPVRPLLDELVGFCAPELATHNIDARIEDNAPGATIYADARQLKQACLNLVINAIDAMPD 496

Query: 578 KGRITIRSEDWVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPFYTTKREGTGLGLSVSQS 637
            GR+T+      E       VI + D G GI+P+ L+RIF PF TTK  GTGLGL+   S
Sbjct: 497 GGRLTLGITSDKEY-----TVISVSDTGQGIEPDMLERIFTPFVTTKASGTGLGLAKVFS 551

Query: 638 LLSQSGGEIKVQSELGVGSTFSIFLPSKNE 667
           ++    G ++  SE   GSTFS+++P+  E
Sbjct: 552 IMENHDGRVECISEKDAGSTFSLYIPANGE 581



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 183 PVRNDFGEIIGFLDGGLLLNNSTT-LVDQ 210
           P+ ND GE+ G +  GLL +NS   LV+Q
Sbjct: 249 PILNDSGELQGVIFSGLLRHNSLVGLVNQ 277