Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  117 bits (292), Expect = 3e-30
 Identities = 88/287 (30%), Positives = 150/287 (52%), Gaps = 16/287 (5%)

Query: 394 RNEEIVQAAHE-LEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAG 452
           R E+ ++  +E LE+++Q RT +L E   +L   +A   Q +  L   +K+ A+G+LT G
Sbjct: 428 RAEQALRELNETLESRIQERTQALAEVYERLLKEMASREQAQEALRQAQKMEAVGQLTGG 487

Query: 453 IAHEINNPTAVILGNTELI-RFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGG 511
           IAH+ NN    I+G  +LI R+         +  IDA +    R   +T  LL ++R+  
Sbjct: 488 IAHDFNNMLTGIIGGLDLIQRYIQSGRHGETQRFIDAAVTSANRAAALTHRLLAFARRQP 547

Query: 512 VQDEITWQHVNPIIDESITLV-KTGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMN 570
           +   +    +N +I+    L+ +T  +   I+  L+ +    V  + +QL   L+NL +N
Sbjct: 548 L--NLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQ-QGLWPVSSDENQLESALLNLVIN 604

Query: 571 AIHAMNGKGRITI--RSEDWVEEGQ------NRGAVIHIEDQGCGIKPENLKRIFDPFYT 622
           A  AM   G + +  R+ +   +G+       R  ++ + D GCG+  + L  +F+PF+T
Sbjct: 605 ARDAMPDGGSLLLETRNVELYSQGEVGDLAAGRYVILRLTDSGCGMSAKVLASVFEPFFT 664

Query: 623 TK--REGTGLGLSVSQSLLSQSGGEIKVQSELGVGSTFSIFLPSKNE 667
           TK   +GTGLGLS+      Q+GG I++ SE G G+  S++LP   E
Sbjct: 665 TKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYLPVYEE 711