Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  113 bits (283), Expect = 4e-29
 Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 15/242 (6%)

Query: 433 TRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGADASRVEEEIDAILLQ 492
           T   L    K+ ALG LT GIAH+ NN    +LG+ EL+R  +  D + +   +D     
Sbjct: 618 TEQTLQQLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRRRMPPDPALLRL-VDNARAG 676

Query: 493 IERIRNITRSLLQYSRQGGVQDEITWQHVN-PIIDESITLVKTGSKKRDIEFVLELKAHN 551
            ER  ++T  +L ++R+     E+    ++ P++ E +  +   S    I+  +EL    
Sbjct: 677 AERGASLTARMLSFARK----QELHKTAIDLPVLIEDMRALLLSSLGPTIQLEVELPPQL 732

Query: 552 S-VEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQNRGAVIH------IEDQ 604
           + V+ + +QL   L+NL  NA  AM G+GRI I +E+     +  G  I       + D 
Sbjct: 733 ARVKTDPNQLETALLNLAANARDAMAGEGRILITAEECALTSEQNGLPIGRYVCLALSDS 792

Query: 605 GCGIKPENLKRIFDPFYTTKR--EGTGLGLSVSQSLLSQSGGEIKVQSELGVGSTFSIFL 662
           G G+    LKR  +PF+TTK   +GTGLGLS+   L  QSGG + +QS  G+G+T  I+L
Sbjct: 793 GTGMDEVTLKRAVEPFFTTKGVGKGTGLGLSMVHGLAEQSGGRLMLQSSPGLGTTAEIWL 852

Query: 663 PS 664
           P+
Sbjct: 853 PA 854