Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 708 a.a., sensor histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  581 bits (1497), Expect = e-170
 Identities = 321/675 (47%), Positives = 447/675 (66%), Gaps = 25/675 (3%)

Query: 11  WRHRFQTTVRYRLWILTSAPIFLTLLALIAITIYWSLHYTWNSALIDVSERLGVAQNSVT 70
           WR + Q  VRYR+ ILT  PI LTL++L+ ITIYW++ YT     + V   L VA N++ 
Sbjct: 12  WR-QMQAKVRYRILILTLLPILLTLVSLVFITIYWNISYTGQQLFMKVKADLTVANNTLE 70

Query: 71  LLQQKQANHVRAFAESYDFRKRLQ-----EPETLSTLPRWVQNQKNRYGLDFLSFERVD- 124
            +Q++Q   +     S++F+   +     + +       ++  ++    LDFL    V+ 
Sbjct: 71  QVQRRQEKELENLLRSWEFQNFFRANHGDKQQQADDFNAFLAERRIAMDLDFLRLINVER 130

Query: 125 -SLEQKFRYLDLTK---RESFFD--VLSADELEKLDPDLAKQAQIPILNS-------QQI 171
            + +   R+L LTK    E F    VLS+  L +LDP LA++A++ +L +       +  
Sbjct: 131 AAADPDLRHL-LTKVKGGEPFTGLMVLSSKRLARLDPVLAERARLTLLPTPRADVPDRDA 189

Query: 172 ETRGLVSRTVIPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQDQLRPTGTLTL 231
           E RG++SR+++P+ +  GE+  +LDGG LLN  T +VD IRDL+Y       R  GT+T+
Sbjct: 190 EDRGMLSRSLMPIVDSEGEVAWYLDGGTLLNRDTRIVDHIRDLVYDKGTLPERSIGTVTI 249

Query: 232 FLDDLRVSTNVPLD----SNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYDAWYITA 287
           FLD++R+STNVPL          GRA+G+ VS EV ++VL  GQ WV+ A+VY+ W+I+A
Sbjct: 250 FLDNVRISTNVPLHFFPRDGEDKGRALGSLVSEEVKHKVLTQGQTWVDRAFVYNDWFISA 309

Query: 288 YEPIRDQYHNEIGMLYTGYLMWPFLKAYVTNILEVGIITLFLLVISGLFVYRGSRDLFRP 347
           Y P+ D     IGM+YTG+   PF+  Y+ NI+E+G I + +L++SG+ VYRG+  L +P
Sbjct: 310 YAPLTDVRGERIGMIYTGFSEAPFIHNYLLNIIELGTILMLVLLVSGMLVYRGAYSLLQP 369

Query: 348 IERIHRVVKMVQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEA 407
           IERIH VVK VQ G+N RIG++GL+  +ELA LA+QFD MLD LQ+RN +I  AA +LE 
Sbjct: 370 IERIHHVVKAVQSGRNVRIGELGLEKDNELANLAEQFDRMLDLLQRRNAQIQSAAEQLEL 429

Query: 408 KVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGN 467
           KV+ RT SLQEKT +L+ +++LLN+TR +LV +EKL ALGELTAGIAHEINNPTAVILGN
Sbjct: 430 KVEERTRSLQEKTEELQRNVSLLNETRAQLVTNEKLTALGELTAGIAHEINNPTAVILGN 489

Query: 468 TELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVNPIIDE 527
            EL+R ELG  A +VEEEID ++ Q+ RI  I RSLLQYSR G     +    + PII+E
Sbjct: 490 MELLRSELGDKAGQVEEEIDLVIQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEE 549

Query: 528 SITLVKTGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSED 587
            + LV+   KK+++    EL A   V++NR QLLQ+L+NL +NA HAM+GKGRI IR+ D
Sbjct: 550 MLVLVRHSIKKQEVVLHQELNASCPVQINRPQLLQVLINLVVNAAHAMDGKGRIWIRTYD 609

Query: 588 WVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPFYTTKREGTGLGLSVSQSLLSQSGGEIK 647
           WV + +  G  I IED+GCGI PE L RIFDPFYTT+ +GTGLGLS+S  ++ + GG I+
Sbjct: 610 WVVQDEPVGVKIEIEDEGCGIAPEQLGRIFDPFYTTRPDGTGLGLSLSYGIIKRIGGTIE 669

Query: 648 VQSELGVGSTFSIFL 662
           V S LG G+ F+I L
Sbjct: 670 VTSTLGKGTLFTIGL 684