Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (271), Expect = 6e-28
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 49/338 (14%)

Query: 363 NQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQEKTAQ 422
           N+ + ++  +D +    +++ F  + DQ       ++Q  +E ++ +        E+  Q
Sbjct: 319 NRELQRLWSNDNNVHLLISEDFHYIDDQAFDLRPAVLQVLNEQKSLIADMM--YLEQYWQ 376

Query: 423 LEHH-------IALLNQTRNKLVVHE------KLAALGELTAGIAHEINNPTAVILGNTE 469
           L+ H       + LL ++  +  + +      +LA+LGEL+AGIAHEINNPT +IL    
Sbjct: 377 LQIHPIANDQVVVLLEESTEQHKLRQANEEASRLASLGELSAGIAHEINNPTGLILHAIS 436

Query: 470 LIRFEL--------------------GADASRVEEEI----DAILLQIERIRNITRSLLQ 505
           L    +                    G   S+  EE+    D I    +RI  I   L +
Sbjct: 437 LFSAAIKDLNPAANYYQQQNPFWQIAGLAPSQAMEEMAVSSDTIEEAAKRISRIVNDLKR 496

Query: 506 YSRQGGVQDEITWQHVNPIIDESITLVKTGSKKRDIEFVLELKAHNSVEVNRHQLLQILV 565
           Y+     QD  T   +N +++ ++ L    +K R +  +L L +   +  +  QL Q+L+
Sbjct: 497 YALPNLTQDH-TLVCLNEVVEVALRLTANQTKTRQVTKLLHLPSPR-IMGDAQQLHQVLI 554

Query: 566 NLQMNAIHAMNG-KGRITIRSEDWVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPFYTTK 624
           NL  NA HA    +G I I ++  V +G+   A+I + D GCG+    LKRI +PF+TT+
Sbjct: 555 NLIQNACHACAAHEGSIQISTQ--VSQGR---ALIKVNDNGCGMDSATLKRITEPFFTTR 609

Query: 625 RE--GTGLGLSVSQSLLSQSGGEIKVQSELGVGSTFSI 660
           R   G+GLGLSV   ++ +  G++++ S  G G+   +
Sbjct: 610 RTEGGSGLGLSVCSRIIKEHQGQMQIHSAPGKGTRIQL 647