Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  137 bits (345), Expect = 3e-36
 Identities = 120/433 (27%), Positives = 206/433 (47%), Gaps = 50/433 (11%)

Query: 10  KWRHRFQTTVRYRLWILTSAPIFLTLLALIAITIYWS------LHYTWNSALIDVSERLG 63
           +W+  ++ ++  RL +L   P+ +TL  ++A+ +         L    ++ LI     L 
Sbjct: 10  RWQRAWRRSLHIRLVVLGLVPMLVTLPVIMAVLVVGGQRFDELLEANAHAHLISTRNYLE 69

Query: 64  VAQN--SVTLLQQKQANHVRAFAESYDFRKRLQEPETLSTLPRWVQNQKNRYGLDFLSFE 121
             +N     +LQQ  +  +    +++    R  +P     L  W ++     GLD+L   
Sbjct: 70  QIRNRSGQQVLQQALSERLPQLLKAH----RGNDPTLGKVLDVWAESA----GLDYLIVA 121

Query: 122 RVDS--------------LEQKF--RYLDLTKRESFFDVLSADELEKLDPDLAKQAQIPI 165
             D               L + F  R +      S ++   A++L +L      +A++ +
Sbjct: 122 TEDGQIIAASTDAVPGTRLPRSFVVRQVLTGLPVSAYERFDAEQLARLGSRFPARARVEV 181

Query: 166 LNSQ--QIETRGLVSRTV--IPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQD 221
             +   + ETRGL+      +P+  D+G+ I F  GG+LLNN+  L+D IR++++P    
Sbjct: 182 AGAPKGEAETRGLLINAAAHLPLSGDYGDAILF--GGILLNNNLALIDNIREVVFPVGTL 239

Query: 222 QLRPTGTLTLFLDDLRVSTNVPLDSNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYD 281
               +GT TLFLDD+RV+TNV L    +  RA+GTR S+EV   VL+ G  WV  A V D
Sbjct: 240 PGGDSGTATLFLDDIRVATNVQL---ANGQRALGTRASAEVNQAVLEEGGTWVRRARVVD 296

Query: 282 AWYITAYEPIRDQYHNEIGMLYTGYLMWPFLKAYVTN--ILEVGIITLFLLVISGLFVYR 339
           +W I  Y+ + D     IGM+Y+G     F + Y  N   L +G I+L L +   L  Y 
Sbjct: 297 SWQIAGYQALLDGEGRRIGMIYSG-----FPETYYQNEKHLLLGGISLVLGLSMLLLTYV 351

Query: 340 GSRDLFRPIERIHRV-VKMVQLGKNQRIGQIG-LDDKHELAQLAKQFDNMLDQLQQRNEE 397
             +   R  +R+ R+   M   G+ + + ++G ++++ E+ QLA  FD +LD L  + + 
Sbjct: 352 FLKKSRRLTDRLQRIRDAMTDFGQGRTLARVGRMEEEDEIGQLAGHFDALLDALDAKEKA 411

Query: 398 IVQAAHELEAKVQ 410
                  L  ++Q
Sbjct: 412 RAHTEWVLRKRMQ 424



 Score = 79.7 bits (195), Expect = 8e-19
 Identities = 78/277 (28%), Positives = 118/277 (42%), Gaps = 29/277 (10%)

Query: 396  EEIVQAAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAH 455
            +E+ Q  H LE  V +RT  L E   + E                    A     A ++H
Sbjct: 787  QELEQHRHHLEELVHARTMELAEARDEAE----------------SASRAKSAFLANMSH 830

Query: 456  EINNPTAVILGNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDE 515
            EI  P   ILG + L+  E+G   +R  E +D I      + NI   +L  S+    +  
Sbjct: 831  EIRTPMNAILGLSHLLGREVG--DARARERVDKIHGAATHLLNIINDILDLSKIEAEKLH 888

Query: 516  ITWQH--VNPIIDESITLVK--TGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNA 571
            +  Q   +  + D +  L++    +K   +E  L+      +  +   L QILVN   NA
Sbjct: 889  LDMQDFLLARLFDNAENLLRPQLEAKGLRLERHLDPALPPVLRGDAMHLQQILVNFLSNA 948

Query: 572  IHAMNGKGRITIRSEDWVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPF------YTTKR 625
            +   + +G IT+ +             + + DQG GI PE    +F  F       T K 
Sbjct: 949  V-KFSDQGHITLGARLLSRSQSQVELRLEVADQGIGIAPEQQAALFQAFEQADNSTTRKY 1007

Query: 626  EGTGLGLSVSQSLLSQSGGEIKVQSELGVGSTFSIFL 662
             GTGLGL++S+ L+   GG+I V S+ G GS F I L
Sbjct: 1008 GGTGLGLAISKRLIRLMGGDIGVDSKPGQGSVFWISL 1044