Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  178 bits (452), Expect = 6e-49
 Identities = 169/617 (27%), Positives = 298/617 (48%), Gaps = 82/617 (13%)

Query: 67  NSVTLLQQKQANHVRAFAESYDFRKRLQEPETLSTLPRWVQNQKNRYGLDFLSFERVDSL 126
           N++T L+      ++  A SY   K    P+ +     +   Q N            +S 
Sbjct: 79  NTITSLKNNNTAELKTLAISY---KNTSAPDFVV----FFDGQGNVVARSNSDVTGDNSY 131

Query: 127 EQKFRYLDLTKRESFFDVLSADEL------EKLDPDLAKQAQIPILNSQQIETRGLVSRT 180
           E  F+ +  +   +  +VL  D +      E ++ D+ K  +  I  S  ++   +   +
Sbjct: 132 EDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDI-KGTEDSINYSDSVQDSAMALVS 190

Query: 181 VIPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQDQLRPTGTLTLFLDDLRVST 240
           + P+ +  G+++G      +LN   ++VD ++D                T+FLD +RVST
Sbjct: 191 IEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDA----------SKDATTIFLDGVRVST 240

Query: 241 NVPLDSNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYDAWYITAYEPIRDQYHNEIG 300
           NV      + GRAIGT VS EV+N V+  G+ +   A+V + WY+TAYEPI D  +  IG
Sbjct: 241 NV----QDNGGRAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIG 296

Query: 301 MLYTGYLMWPF--LKAYVTN-ILEVGIITLFLLVISGLFVYRGSRDLFRPIERIHRVVKM 357
           ML+ G     F  L+A V N    VG+I L + +I    + RG   + +P+E++ +  + 
Sbjct: 297 MLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRG---IIKPLEQLKQGAEW 353

Query: 358 VQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQ 417
           V  G+  +  ++ +D   E  +LAK F+ M  Q+   ++++ + A EL+           
Sbjct: 354 VSNGRYDQ--KVIVDSDDEFGELAKAFNKMATQINISDDKLKKHAEELKI---------- 401

Query: 418 EKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELI-RFELG 476
                          + N+L   +KL +  EL A ++HE+  P   I G  EL+    +G
Sbjct: 402 ---------------SYNELKELDKLKS--ELIAVVSHELRTPLTSIKGYVELVLDGTMG 444

Query: 477 ADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVN--PIIDESITLVKT 534
           A     ++ +      I R+R +  S+L  S+    + E+  + VN   I+ + I  +K 
Sbjct: 445 AINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKP 504

Query: 535 GSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQN 594
            + +++I+   E++   ++E ++ ++ Q+L NL  NAI       + +  +E  +  G  
Sbjct: 505 LATEKNIKLNKEVE-DIAIEADKDRITQVLTNLIENAI-------KFSPANESILVSGVL 556

Query: 595 RGAVIHIE--DQGCGIKPENLKRIFDPFY----TTKRE--GTGLGLSVSQSLLSQSGGEI 646
               IH++  D+G GI  +++++IF+ FY    +TKR+  G+GLGL+V +S++    G I
Sbjct: 557 EDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSI 616

Query: 647 KVQSELGVGSTFSIFLP 663
            V+SELG GSTF I LP
Sbjct: 617 WVESELGKGSTFHIILP 633