Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis JJ

 Score =  177 bits (449), Expect = 1e-48
 Identities = 149/510 (29%), Positives = 258/510 (50%), Gaps = 68/510 (13%)

Query: 168 SQQIETRGLVSRTVIPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQDQLRPTG 227
           S  ++   +   ++ P+ +  G+++G      +LN   ++VD ++D              
Sbjct: 178 SDSVQDSAMALVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDA----------SKD 227

Query: 228 TLTLFLDDLRVSTNVPLDSNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYDAWYITA 287
             T+FLD +RVSTNV      + GRAIGT VS EV+N V+  G+ +   A+V + WY+TA
Sbjct: 228 ATTIFLDGVRVSTNV----QDNGGRAIGTLVSKEVYNHVVLDGKTYYGRAFVVNEWYLTA 283

Query: 288 YEPIRDQYHNEIGMLYTGYLMWPF--LKAYVTN-ILEVGIITLFLLVISGLFVYRGSRDL 344
           YEPI D  +  IGML+ G     F  L+A V N    VG+I L + +I    + RG   +
Sbjct: 284 YEPIYDSDNEIIGMLFVGTPESKFLALQANVRNQTFVVGLIGLLIALIVSYLINRG---I 340

Query: 345 FRPIERIHRVVKMVQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHE 404
            +P+E++ +  + V  G+  +  ++ +D   E  +LAK F+ M  Q+   +E++ + A E
Sbjct: 341 IKPLEQLKQGAEWVSNGRYDQ--KVIVDSDDEFGELAKAFNKMATQINISDEKLKKHAEE 398

Query: 405 LEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVI 464
           L+                          + N+L   +KL +  EL A ++HE+  P   I
Sbjct: 399 LKT-------------------------SYNELKELDKLKS--ELIAIVSHELRTPLTSI 431

Query: 465 LGNTELI-RFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVN- 522
            G  EL+    +G      ++ +      I R+R +  S+L  S+    + E+  + VN 
Sbjct: 432 KGYVELVLDGTMGTINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNL 491

Query: 523 -PIIDESITLVKTGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRI 581
             I+ + I  +K  + +++I+   E++   ++E ++ ++ Q+L NL  NAI       + 
Sbjct: 492 RAIVCDVIEYLKPLATEKNIKLNKEVE-DIAIEADKDRITQVLTNLIENAI-------KF 543

Query: 582 TIRSEDWVEEGQNRGAVIHIE--DQGCGIKPENLKRIFDPFY----TTKRE--GTGLGLS 633
           +  +E  +  G      IH++  D+G GI  +++++IF+ FY    +TKR+  G+GLGL+
Sbjct: 544 SPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLA 603

Query: 634 VSQSLLSQSGGEIKVQSELGVGSTFSIFLP 663
           V +S++    G I V+SELG GSTF I LP
Sbjct: 604 VCKSIVEAHKGSIWVESELGKGSTFHIILP 633