Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  588 bits (1515), Expect = e-172
 Identities = 322/677 (47%), Positives = 446/677 (65%), Gaps = 26/677 (3%)

Query: 8   WQKWRHRFQTTVRYRLWILTSAPIFLTLLALIAITIYWSLHYTWNSALIDVSERLGVAQN 67
           WQ+     Q  VRYR+ ILT  PI LTL++L+ ITIYW++ YT     + V   L VA+N
Sbjct: 12  WQQ----MQAKVRYRILILTLLPILLTLVSLVFITIYWNISYTGKQLFMKVKADLAVAEN 67

Query: 68  SVTLLQQKQANHVRAFAESY----DFRKRLQEPET-LSTLPRWVQNQKNRYGLDFLSFER 122
           ++  +Q +Q   +     S+    DFR  L       +++  ++  QK +  LDFL    
Sbjct: 68  TLQQVQVRQEKQLERVMTSWTFQNDFRPILSGALAHRASIDTFLHEQKKQLDLDFLRLVS 127

Query: 123 V------DSLEQKFRYLDLTKRESFFDVLSADELEKLDPDLAKQAQIPILNS-------Q 169
           V        L Q    +      S   VLS + L ++DPDLA++A IP+L +       +
Sbjct: 128 VAEAAADPDLRQILPKIGGMLPYSGLMVLSRERLARIDPDLAQRASIPLLATLRAQSPDK 187

Query: 170 QIETRGLVSRTVIPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQDQLRPTGTL 229
           Q+E RGL+SR+++P+ +  G++  +LDGG+L N  T +VD IRDL+Y       R  GT+
Sbjct: 188 QVEERGLLSRSLLPIPDSEGKVAWYLDGGVLFNRDTRIVDHIRDLVYDKGTLPERSIGTV 247

Query: 230 TLFLDDLRVSTNVPL----DSNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYDAWYI 285
           T+FLD++RVSTNVPL      N   GRA+G+ VS EV  +VL  G+ WV+ A+VY+ W+I
Sbjct: 248 TIFLDNIRVSTNVPLHFFPQPNESQGRALGSLVSEEVREKVLNHGELWVDRAFVYNDWFI 307

Query: 286 TAYEPIRDQYHNEIGMLYTGYLMWPFLKAYVTNILEVGIITLFLLVISGLFVYRGSRDLF 345
           +AY P+ D     +GM+YTG+   PF+  Y+ NI+E+G I + +L+ISGL VYRG+  L 
Sbjct: 308 SAYAPLEDIRGQRVGMIYTGFSESPFIHNYLLNIIELGTILMLVLLISGLLVYRGAYSLL 367

Query: 346 RPIERIHRVVKMVQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHEL 405
           +PIERIH VV+ VQ G+N RIG +GLD  +EL+ LA+QFD MLD LQ+RN +I  AA +L
Sbjct: 368 QPIERIHHVVQAVQSGRNVRIGALGLDRDNELSNLAEQFDRMLDLLQRRNAQIQAAAEQL 427

Query: 406 EAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVIL 465
           E KV+ RT SLQ+KT +L+ ++ALLN+TR +LV +EKL ALGELTAGIAHEINNPTAVIL
Sbjct: 428 EMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINNPTAVIL 487

Query: 466 GNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVNPII 525
           GN EL+R+ELG  A  V+EEID ++ Q+ RI  I RSLLQYSR G     +    + PII
Sbjct: 488 GNMELLRYELGDKAEVVKEEIDLVIQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPII 547

Query: 526 DESITLVKTGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRS 585
           +E + LV+   +K+++  + EL A   V+VNR QLLQ+L+NL +NA HAM+GKGRI +R+
Sbjct: 548 EEMLVLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRT 607

Query: 586 EDWVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPFYTTKREGTGLGLSVSQSLLSQSGGE 645
            DWV++    G  I +ED+G GI+PE L RIFDPFYTT+++GTGLGLS+S  ++ + GG 
Sbjct: 608 YDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGT 667

Query: 646 IKVQSELGVGSTFSIFL 662
           I+V S LG GS F+I L
Sbjct: 668 IEVSSVLGKGSIFTIGL 684