Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (289), Expect = 3e-30
 Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 53/309 (17%)

Query: 398 IVQAAHELEAKVQSRTASLQEKTAQLEHHIALLNQ----TRNKLVVHEKLAALGELTAGI 453
           IVQ   EL +  Q++   L E+  Q    ++LLN+     +N+L+  EK+ A+G+L AG+
Sbjct: 123 IVQDVTELASYYQAQKC-LSEQLEQEHTALSLLNKKLEAAQNQLLQSEKMVAIGQLAAGV 181

Query: 454 AHEINNPTAVILGNTE-----------------------------------LIRFELGAD 478
           AHEINNP   +  N +                                   L R++    
Sbjct: 182 AHEINNPIGFVNSNLQSLQDYNNKLLKLLNFYQKLTHKIGSVPYFTLEQDMLKRYQFEFI 241

Query: 479 ASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGSKK 538
            S + + I   +  ++R+  I +SL  +S      D   WQ+ N I     TL    ++ 
Sbjct: 242 CSDLPDLIRESIEGLDRVAVIVKSLKSFSHV----DSSEWQYANVIEGIENTLKIAANQI 297

Query: 539 RDIEFVLELKAHNSVEV--NRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQNRG 596
           +    VL     N  E+     QL Q+ +NL +NA  A+  +G I+I          +  
Sbjct: 298 KYKAVVLRNFQDNLPELYCQPMQLNQVFLNLLVNAAQAIEERGEISIDVS-----ASDAE 352

Query: 597 AVIHIEDQGCGIKPENLKRIFDPFYTTK--REGTGLGLSVSQSLLSQSGGEIKVQSELGV 654
            +I I D G GI   +L++IF+PFYTTK    GTGLGLS+S S++ +  GEIKV S LG 
Sbjct: 353 FIIVIRDTGSGIAASDLRKIFEPFYTTKLVGTGTGLGLSLSYSIVQKHKGEIKVSSVLGE 412

Query: 655 GSTFSIFLP 663
           G+ F++ LP
Sbjct: 413 GTAFTVILP 421