Pairwise Alignments
Query, 530 a.a., ABC-F family ATPase from Vibrio cholerae E7946 ATCC 55056
Subject, 637 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 276 bits (705), Expect = 2e-78
Identities = 171/517 (33%), Positives = 284/517 (54%), Gaps = 19/517 (3%)
Query: 12 GAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSGGNVSYDPNERVAKLNQ 71
G+K L + S+ G++ GL+GANG GKS+ + ++ G L G S ++A + Q
Sbjct: 12 GSKTLLDEASLTIYPGHKVGLVGANGTGKSSLLALIMGHLSLDKGEFSMPSGWQIASVAQ 71
Query: 72 DQFAYEEFTVIDTVIMGHKELWKVKQERDRIYALPEMTEEDGMRVADLEVEFAEMDGYMA 131
+ A + + ++ V+ G KE +++ + ++ E DG +A L + + GY
Sbjct: 72 ETPALD-MSALEYVLDGDKEYRQLEAD---LHIAQE--HNDGHAIATLHGKIDAIGGYAI 125
Query: 132 ESKAGELLLAVGIPLEQHYGLMSSVAPGWKLRVLLAQILFADPDIMLLDEPTNNLDIDTI 191
++AG LL +G + + S + GW++R+ LAQ L D++LLDEPTN+LD+DT+
Sbjct: 126 RARAGALLAGLGFSEAEQNNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTM 185
Query: 192 RWLEDTLNARNCTMIIISHDRHFLNSVCTHMADLDYGELRIYPGNYD--EYMTAATQARE 249
WLE + + T+I+ISHDR F++ + + ++ +L Y GNY E + A A++
Sbjct: 186 YWLEGWIKSYQGTLILISHDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIRAERMAQQ 245
Query: 250 RLLSDNAKKKAQIAELQTFVARFSANASKAKQATSRARQIDKIKLDEVKASSRQNPFIRF 309
++ + +K+ A +Q+FV RF ASKAKQA SR + ++ ++ E+ S +PF
Sbjct: 246 QVAFERQQKER--AHMQSFVDRFRYKASKAKQAQSRLKALE--RMTELLPSQADSPFYME 301
Query: 310 EQSKELFRNALI-VENLSQGF-DHDLFSNFNAIFEVGERVAIIGENGVGKTTLLNTLAGV 367
+ E N LI +E ++ G+ D + S + G R+ ++G NG GK+TL+ L+G
Sbjct: 302 FRPPEALPNPLIKMEQVAVGYGDKQILSKVHLNLVPGARIGLLGRNGAGKSTLIKLLSGQ 361
Query: 368 LEPRSGMYKWSENSNIGYYAQDHAHEF--AEDLNLMEWMGQWRQEGDDEQVVRSFLGRML 425
L P +G+Y+ + NIGY+AQ H EF +D L + EQ +R+FLG
Sbjct: 362 LSPMTGLYEPNPGLNIGYFAQ-HQIEFLRLDDTPLQHLVR--LAPNAREQELRNFLGGFG 418
Query: 426 FGQDDIKKSVKVLSGGEQGRMLLGKLMMHKPNMLLLDEPTNHMDMESIESLNNALEQYKG 485
F D V+ SGGE+ R++L L+ +PN+LLLDEPTNH+D+E +L AL+ ++G
Sbjct: 419 FNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEG 478
Query: 486 TLFFVSHDRVFVDSLATRIIEIRDGKITDFKGTYAEF 522
+ VSHDR + + + G++ F G ++
Sbjct: 479 AMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGDLDDY 515
Score = 102 bits (254), Expect = 4e-26
Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 43/302 (14%)
Query: 1 MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSGGNVSY 60
+I + +G K + + + G R GL+G NG GKST +K+LSG+L P G
Sbjct: 312 LIKMEQVAVGYGDKQILSKVHLNLVPGARIGLLGRNGAGKSTLIKLLSGQLSPMTGLYEP 371
Query: 61 DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWKVKQERDRIYALPEMTEEDGMRVADLE 120
+P + Q Q EF +D + H + L E +R
Sbjct: 372 NPGLNIGYFAQHQI---EFLRLDDTPLQH------------LVRLAPNAREQELR----- 411
Query: 121 VEFAEMDGYMAESKAGELLLAVGIPLEQHYGLMSSVAPGWKLRVLLAQILFADPDIMLLD 180
F G+ G++ L+ P+ G G K R++LA +++ P+++LLD
Sbjct: 412 -NFLGGFGF-----NGDMALS---PVRPFSG-------GEKARLVLALLVWQRPNLLLLD 455
Query: 181 EPTNNLDIDTIRWLEDTLNARNCTMIIISHDRHFLNSVCTHMADLDYGELRIYPGNYDEY 240
EPTN+LD++ L L M+I+SHDRH L C+ +D GE++ + G+ D+Y
Sbjct: 456 EPTNHLDLEMRHALTMALQTFEGAMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGDLDDY 515
Query: 241 ------MTAATQARERLLSDNAKKKAQIAELQTFVARFSANASKAKQATSRARQIDKIKL 294
A A + SD+ K + + A S K+ ++ +ID+ KL
Sbjct: 516 HQWLLDAAKAASANQAANSDDTKPAVDKKQQKRLEAELRQKVSPLKRKQAKL-EIDQQKL 574
Query: 295 DE 296
E
Sbjct: 575 SE 576
Score = 94.7 bits (234), Expect = 9e-24
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 35/215 (16%)
Query: 344 GERVAIIGENGVGKTTLLNTLAGVLEPRSGMYKWSENSNIGYYAQDHAHEFAEDLNLMEW 403
G +V ++G NG GK++LL + G L G + I AQ+ A D++ +E+
Sbjct: 27 GHKVGLVGANGTGKSSLLALIMGHLSLDKGEFSMPSGWQIASVAQETP---ALDMSALEY 83
Query: 404 M----GQWRQEGDDEQV------------------------VRSFLGRML----FGQDDI 431
+ ++RQ D + +R+ G +L F + +
Sbjct: 84 VLDGDKEYRQLEADLHIAQEHNDGHAIATLHGKIDAIGGYAIRARAGALLAGLGFSEAEQ 143
Query: 432 KKSVKVLSGGEQGRMLLGKLMMHKPNMLLLDEPTNHMDMESIESLNNALEQYKGTLFFVS 491
VK SGG + R+ L + ++ + ++LLLDEPTNH+D++++ L ++ Y+GTL +S
Sbjct: 144 NNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTMYWLEGWIKSYQGTLILIS 203
Query: 492 HDRVFVDSLATRIIEIRDGKITDFKGTYAEFLKSR 526
HDR F+D + I+ + + K+ +KG Y+ F + R
Sbjct: 204 HDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIR 238