Pairwise Alignments

Query, 553 a.a., (Fe-S)-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., ferredoxin-type protein NapF (RefSeq) from Shewanella loihica PV-4

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 406 ISAPYGTIECQTSD-CTLCMSCVAVCPTRALHLA-GDSPALRFIEQDCVQCGLCVKACPE 463
           I  P+ + + + +D CT C  C+  C T+ L    G  P + F + +C  CG C K CPE
Sbjct: 21  IRPPWSSTDVEFTDICTRCDKCIDACETKILSRGDGGFPEVSFSQDECTFCGACAKVCPE 80

Query: 464 QVLSATPQLNW 474
            + + T +  W
Sbjct: 81  PLFTDTEETPW 91



 Score = 39.7 bits (91), Expect = 8e-08
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 157 PTLMGTFDKPKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQINPYL 216
           P    T + P   +   D    ++ G+  C+ C DAC   A+S   S     +  I+  +
Sbjct: 81  PLFTDTEETPWQIKASIDQSCLANSGI-WCQTCKDACDPRAISFTASIGQAPKPVIDTEM 139

Query: 217 CQGVGTCATACPTEAI 232
           C G G C   CP ++I
Sbjct: 140 CNGCGACVAPCPNQSI 155



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 415 CQTSDCTLCMSCVAVCPTRALHLA---GDSPALRFIEQDCVQCGLCVKACPEQ 464
           C  +    C +C   C  RA+      G +P      + C  CG CV  CP Q
Sbjct: 101 CLANSGIWCQTCKDACDPRAISFTASIGQAPKPVIDTEMCNGCGACVAPCPNQ 153



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 186 CERCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKF 245
           C++C+DAC    LS    +     +  +   C   G CA  CP        P  TDT++ 
Sbjct: 39  CDKCIDACETKILSR--GDGGFPEVSFSQDECTFCGACAKVCPE-------PLFTDTEET 89

Query: 246 IERLLANYHQA 256
             ++ A+  Q+
Sbjct: 90  PWQIKASIDQS 100



 Score = 25.0 bits (53), Expect = 0.002
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 417 TSDCTLCMSCVAVCPTRALHLA 438
           T  C  C +CVA CP +++ L+
Sbjct: 137 TEMCNGCGACVAPCPNQSIKLS 158